View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0962_low_23 (Length: 453)
Name: NF0962_low_23
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 48 - 443
Target Start/End: Complemental strand, 45322554 - 45322159
Alignment:
| Q |
48 |
aatattagtattcatgcaattcatatgtttctactctacagatttttaattcaagggtgcaagttggttggatgtggttctgctttgccatctcttcaga |
147 |
Q |
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| T |
45322554 |
aatattagtattcatgcaattcatatgtttctactctacagatttttaattcaagggtgcaagttggttggatgtggttctgctttgccatctcttcaga |
45322455 |
T |
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| Q |
148 |
ttactaatgaagatctttccaaagttgttgatactagtgatgaatggatatatgctcgcacagggattcggaagcggcgtgttctttcaggttagtcttt |
247 |
Q |
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| T |
45322454 |
ttactaatgaagatctttccaaagttgttgatactagtgatgaatggatatatgctcgcacagggattcggaagcggcgtgttctttcaggttagtcttt |
45322355 |
T |
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| Q |
248 |
ggttttagtgcatgttattgatttcaacaaaacaaatacatggttagattacttgcttagtttcagattttgaggtcttttcgggcgcattaaggttctt |
347 |
Q |
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| T |
45322354 |
ggttttagtgcatgttattgatttcaacaagacaaatacatggttagattacttgcttagtttcagattttgaggtcttttcgggcgcattaaggttctt |
45322255 |
T |
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| Q |
348 |
cggctgctgnnnnnnnaccagccagcagtagtatttcattgattttcctgttgtgctgcgcttttatttggtcacagtattctgttttggcctttg |
443 |
Q |
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| T |
45322254 |
cggctgctgttttcttaccagccagcagtagtatttcattgattttcctgttgtgctgcgcttttttttggtcacagaattctgttttggcctttg |
45322159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 98 - 243
Target Start/End: Complemental strand, 984381 - 984236
Alignment:
| Q |
98 |
tcaagggtgcaagttggttggatgtggttctgctttgccatctcttcagattactaatgaagatctttccaaagttgttgatactagtgatgaatggata |
197 |
Q |
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|||||| || ||| |||| ||||||||||| ||| ||||| ||||| ||||||||||||| || ||| | ||| | ||||||||| ||||||||||||| |
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| T |
984381 |
tcaaggctgtaagctggtaggatgtggttcagctgtgccaactcttgagattactaatgacgagcttgcaaaaatagttgatacttctgatgaatggata |
984282 |
T |
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| Q |
198 |
tatgctcgcacagggattcggaagcggcgtgttctttcaggttagt |
243 |
Q |
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| T |
984281 |
aatgttcgcaccgggattcgtaaacgccgagttctttcaggttagt |
984236 |
T |
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