View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0962_low_25 (Length: 398)
Name: NF0962_low_25
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 97 - 303
Target Start/End: Original strand, 28934920 - 28935127
Alignment:
| Q |
97 |
cactaaaagctgcaacagaagttttctactctgcattataagggaattgatgcttgtatagattttacgacaatattttagaaataagaccagtaacttc |
196 |
Q |
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| T |
28934920 |
cactataagctgcaacagaagttttctactctgcattataagggaattgatgcttgtatagattttacgacaatattttagaaataagaccagtaacttc |
28935019 |
T |
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| Q |
197 |
tagtgatgatcaagattacctattacttgtacgagaagatgggaattcttctgtaaatagtcattt-gggtcgcttttggttctaacaaaacatcccaac |
295 |
Q |
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| T |
28935020 |
tagtgatgatcaagattacctattacttgtacgagaagatgggaattcttctgtaaatagtcatttggggtcggttttggttctaacaaaacatcccaac |
28935119 |
T |
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| Q |
296 |
actttgtc |
303 |
Q |
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|||||||| |
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| T |
28935120 |
actttgtc |
28935127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 207 - 301
Target Start/End: Original strand, 28901785 - 28901879
Alignment:
| Q |
207 |
caagattacctattacttgtacgagaagatgggaattcttctgtaaatagtcatttgggtcgcttttggttctaacaaaacatcccaacactttg |
301 |
Q |
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| T |
28901785 |
caagattacctatgacttgtaagagcagatgagaattcttctgtaaatagtcatttgggtcggatttggttctaacataacttcccaacactttg |
28901879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 208 - 301
Target Start/End: Original strand, 28891832 - 28891925
Alignment:
| Q |
208 |
aagattacctattacttgtacgagaagatgggaattcttctgtaaatagtcatttgggtcgcttttggttctaacaaaacatcccaacactttg |
301 |
Q |
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| T |
28891832 |
aagattacctattacttgtacgagcagatgagaatttttctgtaaataatcatttcggtcggatttgattctaacaaaacttcccaacactttg |
28891925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 207 - 301
Target Start/End: Original strand, 28916200 - 28916294
Alignment:
| Q |
207 |
caagattacctattacttgtacgagaagatgggaattcttctgtaaatagtcatttgggtcgcttttggttctaacaaaacatcccaacactttg |
301 |
Q |
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| T |
28916200 |
caagattacctgttacttctaaaagcagatgagaattcttctgtaaatagtcatttgggtcggatttggttctaacataacttcccaacactttg |
28916294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 207 - 301
Target Start/End: Original strand, 28925438 - 28925532
Alignment:
| Q |
207 |
caagattacctattacttgtacgagaagatgggaattcttctgtaaatagtcatttgggtcgcttttggttctaacaaaacatcccaacactttg |
301 |
Q |
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| T |
28925438 |
caagagtacctttgacttgtacgagcagatgagaattcttttgtaaatagtcatttgggtcggatttgattctaacataacttcccaacactttg |
28925532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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