View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0962_low_3 (Length: 700)

Name: NF0962_low_3
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0962_low_3
NF0962_low_3
[»] chr1 (19 HSPs)
chr1 (255-671)||(31063731-31064152)
chr1 (2-260)||(31062820-31063079)
chr1 (408-628)||(33380862-33381083)
chr1 (411-670)||(27761739-27761996)
chr1 (411-670)||(12906091-12906349)
chr1 (416-670)||(36724650-36724904)
chr1 (408-670)||(23193122-23193384)
chr1 (413-628)||(24159740-24159954)
chr1 (411-670)||(2493719-2493976)
chr1 (418-670)||(32987185-32987437)
chr1 (520-627)||(28858005-28858112)
chr1 (493-660)||(25661732-25661899)
chr1 (464-583)||(19798998-19799118)
chr1 (489-569)||(12260010-12260091)
chr1 (411-441)||(28858159-28858189)
chr1 (489-569)||(23192817-23192898)
chr1 (493-569)||(33301180-33301257)
chr1 (489-569)||(47451225-47451306)
chr1 (489-569)||(47455386-47455467)
[»] chr3 (25 HSPs)
chr3 (408-670)||(48435727-48435988)
chr3 (411-660)||(16982930-16983180)
chr3 (417-660)||(12156390-12156633)
chr3 (411-595)||(48432346-48432529)
chr3 (411-576)||(4662120-4662286)
chr3 (439-628)||(21100029-21100217)
chr3 (489-583)||(3672598-3672694)
chr3 (489-583)||(3692630-3692726)
chr3 (588-670)||(48432200-48432282)
chr3 (489-569)||(18467237-18467318)
chr3 (483-548)||(3657261-3657327)
chr3 (489-569)||(758368-758449)
chr3 (489-569)||(12965873-12965954)
chr3 (489-569)||(23666123-23666204)
chr3 (489-569)||(24038371-24038452)
chr3 (489-569)||(39775728-39775809)
chr3 (489-569)||(55431327-55431408)
chr3 (494-583)||(32474665-32474756)
chr3 (489-549)||(3033656-3033717)
chr3 (489-569)||(7571218-7571299)
chr3 (489-569)||(8069692-8069772)
chr3 (489-569)||(8883182-8883263)
chr3 (489-569)||(12112641-12112722)
chr3 (587-660)||(28243431-28243504)
chr3 (493-569)||(49971424-49971501)
[»] chr4 (19 HSPs)
chr4 (411-628)||(33722861-33723077)
chr4 (423-628)||(20513055-20513260)
chr4 (411-628)||(15020407-15020625)
chr4 (411-670)||(55081602-55081854)
chr4 (411-628)||(16595881-16596094)
chr4 (414-649)||(40684752-40684986)
chr4 (438-651)||(2575174-2575387)
chr4 (420-660)||(39991787-39992027)
chr4 (489-569)||(51697931-51698012)
chr4 (464-542)||(12878229-12878307)
chr4 (489-583)||(31273535-31273631)
chr4 (489-583)||(37259862-37259958)
chr4 (464-534)||(1151334-1151403)
chr4 (489-569)||(5271419-5271500)
chr4 (489-569)||(13521992-13522073)
chr4 (492-569)||(31765903-31765981)
chr4 (489-581)||(37264551-37264645)
chr4 (489-569)||(31269048-31269129)
chr4 (489-569)||(47244262-47244343)
[»] chr6 (19 HSPs)
chr6 (411-670)||(35129566-35129824)
chr6 (413-670)||(32814962-32815220)
chr6 (411-648)||(14041627-14041863)
chr6 (519-670)||(14775629-14775779)
chr6 (432-570)||(32551518-32551655)
chr6 (411-474)||(7499228-7499291)
chr6 (489-569)||(24589164-24589245)
chr6 (511-628)||(29610857-29610974)
chr6 (489-569)||(2700106-2700187)
chr6 (489-569)||(21309045-21309126)
chr6 (489-569)||(33687603-33687684)
chr6 (495-569)||(17964559-17964634)
chr6 (464-569)||(6407860-6407965)
chr6 (492-569)||(12688988-12689066)
chr6 (411-500)||(14775534-14775623)
chr6 (495-583)||(16836141-16836231)
chr6 (489-569)||(11570749-11570830)
chr6 (493-569)||(11614092-11614169)
chr6 (411-440)||(29610986-29611015)
[»] chr2 (19 HSPs)
chr2 (411-670)||(44957336-44957595)
chr2 (411-660)||(14104528-14104776)
chr2 (411-505)||(13060433-13060526)
chr2 (411-612)||(41558978-41559178)
chr2 (489-583)||(9180709-9180805)
chr2 (489-583)||(18344445-18344541)
chr2 (491-583)||(9189788-9189882)
chr2 (489-569)||(12796939-12797020)
chr2 (489-569)||(30658277-30658358)
chr2 (489-583)||(25478282-25478378)
chr2 (489-569)||(1934993-1935074)
chr2 (489-569)||(10160724-10160805)
chr2 (489-569)||(19892466-19892547)
chr2 (489-569)||(31326753-31326834)
chr2 (489-583)||(25497310-25497406)
chr2 (489-583)||(30650943-30651039)
chr2 (489-567)||(29677395-29677474)
chr2 (489-550)||(28603312-28603374)
chr2 (489-569)||(35601936-35602017)
[»] chr8 (23 HSPs)
chr8 (414-670)||(19954211-19954468)
chr8 (411-599)||(4544221-4544410)
chr8 (411-670)||(2469910-2470170)
chr8 (417-628)||(19949760-19949972)
chr8 (411-651)||(34517179-34517417)
chr8 (456-628)||(7145797-7145969)
chr8 (411-574)||(20072034-20072196)
chr8 (561-651)||(30778954-30779044)
chr8 (411-509)||(30777026-30777123)
chr8 (464-564)||(28564826-28564926)
chr8 (464-564)||(28572449-28572549)
chr8 (492-550)||(2355478-2355537)
chr8 (522-605)||(28237840-28237923)
chr8 (489-569)||(31449866-31449947)
chr8 (464-567)||(1807462-1807565)
chr8 (489-583)||(34118480-34118576)
chr8 (489-583)||(40125870-40125966)
chr8 (489-550)||(1910988-1911050)
chr8 (489-569)||(15875668-15875749)
chr8 (493-569)||(17793471-17793548)
chr8 (489-569)||(19166648-19166729)
chr8 (489-569)||(44925923-44926004)
chr8 (493-583)||(33416565-33416657)
[»] chr7 (14 HSPs)
chr7 (411-660)||(6898266-6898514)
chr7 (411-670)||(29478054-29478314)
chr7 (411-656)||(23616295-23616544)
chr7 (427-549)||(1289353-1289474)
chr7 (538-660)||(25832272-25832394)
chr7 (561-651)||(20130251-20130341)
chr7 (464-569)||(44423137-44423242)
chr7 (489-569)||(4579522-4579603)
chr7 (489-569)||(9650967-9651048)
chr7 (489-569)||(23866082-23866163)
chr7 (491-569)||(44510677-44510756)
chr7 (489-569)||(23246933-23247014)
chr7 (489-569)||(26341213-26341294)
chr7 (489-529)||(15642248-15642288)
[»] chr5 (21 HSPs)
chr5 (411-670)||(18265404-18265664)
chr5 (411-670)||(1286165-1286422)
chr5 (491-569)||(41587160-41587239)
chr5 (451-594)||(25215203-25215344)
chr5 (451-594)||(25279354-25279495)
chr5 (489-583)||(36937496-36937592)
chr5 (489-583)||(36942250-36942346)
chr5 (464-583)||(6155404-6155524)
chr5 (489-569)||(7451772-7451853)
chr5 (489-569)||(12103039-12103120)
chr5 (489-569)||(26667286-26667367)
chr5 (489-569)||(26938883-26938964)
chr5 (489-569)||(29167973-29168054)
chr5 (489-569)||(35679875-35679956)
chr5 (489-569)||(37652830-37652911)
chr5 (489-583)||(12501884-12501980)
chr5 (489-583)||(42001448-42001544)
chr5 (489-569)||(556709-556790)
chr5 (489-569)||(561481-561562)
chr5 (489-569)||(32461549-32461630)
chr5 (489-569)||(39523063-39523144)
[»] scaffold0018 (1 HSPs)
scaffold0018 (416-628)||(171657-171869)
[»] scaffold0182 (1 HSPs)
scaffold0182 (489-583)||(9872-9968)
[»] scaffold0057 (1 HSPs)
scaffold0057 (490-569)||(35649-35729)
[»] scaffold0352 (1 HSPs)
scaffold0352 (489-569)||(7118-7199)
[»] scaffold0002 (1 HSPs)
scaffold0002 (489-583)||(4088-4184)


Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 255 - 671
Target Start/End: Original strand, 31063731 - 31064152
Alignment:
Q  255 aaacacaagcaaaccatatttgattgtgttatgacctttcaaatcgctcgcagctacgatctttgagatgatttttattttaagaatcattgaaaaagaa 354  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31063731 aaacacaagcaacccatatttgattgtgttatgacctttcaaatcgctcgcagctacgatctttgagatgatttttattttaagaatcattgaaaaagaa 31063830  T
Q  355 gcggttttgtnnnnnnn------taaataaataaagaagtattcaaaagtagatctaacatatgttggaacaatagtcaaaattagttaaaaaatatttc 448  Q
    ||||||||||             |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31063831 gcggttttgtaaaaaataaaaaataaaaaaataaagaagtattcaaaagtagatctaacatatgttggaacaatagtcaaaattagttaaaaaatatttc 31063930  T
Q  449 ttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttcatgacacttttcaaaattgttcaagcagactattaacca 548  Q
    ||||||||||||||||||||||||||||||| | | ||| ||||||||||||||| ||||| || |||||| |||||||||||||||| ||||| |||||    
T  31063931 ttgtcaccgaagagattactaggctgagtcgtggactaggtcgctctctttaagaggtttcgtggcactttccaaaattgttcaagcaaactatcaacca 31064030  T
Q  549 cgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactataggatctgttctggaaatacacttcaaagtatggtgctaaga 648  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31064031 cgacgt-cccaggataaaacagcccagcaacaactatatcagagtcttattgcactataggatctgttctggaaatacacttcaaaatatggtgctaaga 31064129  T
Q  649 ccattctaatattgcattgatag 671  Q
    |||||||||||||||||||||||    
T  31064130 ccattctaatattgcattgatag 31064152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 260
Target Start/End: Original strand, 31062820 - 31063079
Alignment:
Q  2 ggatgtcgaagaatataaacaaatatgaaaattatgttttagcagcgacatttgactac--ttgtatcaaaaaagtgttatctattggttaaataaatcc 99  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||  |  ||||||||||| |||||||||||||||||||||| ||||    
T  31062820 ggatgttgaataaaataaacaaatatgaaaattatgttttagcagcgacatttgacagcgcttgtatcaaaa-agtgttatctattggttaaatacatcc 31062918  T
Q  100 ctcgctaaggctgacatgtaacataacaacccttacaaatagaaagtgttatctattaattgatgacataaggcaccacctagaaggagaaaatgttgtc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  31062919 ctcgctaaggctgacatgtaacataacaacccttacaaatagaaagtgttatctattaattgatgacataaggtaccacctaaaaggagaaaatgttgtc 31063018  T
Q  200 taattgtcacatttaacaactattttaacaaaagatgctatcaaaaggtgacattaaacac 260  Q
    |||||||||||||||||||| ||||||| |||||| |||||| ||||||||||||||||||    
T  31063019 taattgtcacatttaacaacgattttaaaaaaagaagctatctaaaggtgacattaaacac 31063079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 408 - 628
Target Start/End: Complemental strand, 33381083 - 33380862
Alignment:
Q  408 atatgttggaacaatagtcaaaattagttaaaaa-atatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgt 506  Q
    |||||||||||||||||||||||||||||||||| || ||| || |||| ||| ||||||||||||||||||| ||| ||| ||||||||||||||||||    
T  33381083 atatgttggaacaatagtcaaaattagttaaaaatattttttttatcacagaaaagattactaggctgagtcgtgtactaggtcgctctctttaagacgt 33380984  T
Q  507 ttcatgacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactat 606  Q
    ||| |||||||  |||||||||| |||||||||||| |||||||||||||||| |||||||||||||||| |||||| || ||||||| |||||||||||    
T  33380983 ttcgtgacactgctcaaaattgtgcaagcagactatcaaccacgacgtccccaagataaaacagcccagctacaactgtaccagagtcatattgcactat 33380884  T
Q  607 aggatctgttctggaaatacac 628  Q
    |||||||||||| |||||||||    
T  33380883 aggatctgttctagaaatacac 33380862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 411 - 670
Target Start/End: Complemental strand, 27761996 - 27761739
Alignment:
Q  411 tgttggaacaatagtcaaaattagttaaaaaatatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttca 510  Q
    |||||||||||||||||| |||||||||||||||||| ||||||  ||||| ||||||||| ||||||||  | ||| || |||||||||| |||||||     
T  27761996 tgttggaacaatagtcaacattagttaaaaaatattt-ttgtcattgaagatattactaggttgagtcgcagactaggtcactctctttaaaacgtttcg 27761898  T
Q  511 tgacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactatagga 610  Q
    || |||| | ||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||| |||| | |||||||| | |||||||||||||||    
T  27761897 tggcactgtccaaaattgtgcaagcagactatcaaccacgacgtccccaggataaaacagtccagctacaattgtatcagag-catattgcactatagga 27761799  T
Q  611 tctgttctggaaatacacttcaaagtatggtgctaagaccattctaatattgcattgata 670  Q
    |||||||| ||||||||| |   | ||||||||||||||||||| ||||| | |||||||    
T  27761798 tctgttctagaaatacacctttcaatatggtgctaagaccattccaatatggtattgata 27761739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 411 - 670
Target Start/End: Original strand, 12906091 - 12906349
Alignment:
Q  411 tgttggaacaatagtcaaaa-ttagttaaaaaatatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttc 509  Q
    |||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||| ||||||| | ||| |||||||||||||||||||||    
T  12906091 tgttggaacaatagtcaaaaattagttaaaaaatattt-ttgttaccgaagagattactaggcttagtcgcgaactaggtcgctctctttaagacgtttc 12906189  T
Q  510 atgacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactatagg 609  Q
     || ||||   ||||||||| |||||||||||| |||||||||| |||||||||||||||||| ||  |||| | |||||||||| |||||||| |||||    
T  12906190 gtggcactgcccaaaattgtgcaagcagactatcaaccacgacg-ccccaggataaaacagccaagttacaattgtatcagagtcctattgcacaatagg 12906288  T
Q  610 atctgttctggaaataca-cttcaaagtatggtgctaagaccattctaatattgcattgata 670  Q
    || ||||||  || |||| ||||||| |||||||||||||||| |||||||| | |||||||    
T  12906289 atatgttctaaaagtacaccttcaaa-tatggtgctaagaccactctaatatggtattgata 12906349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 416 - 670
Target Start/End: Original strand, 36724650 - 36724904
Alignment:
Q  416 gaacaatagtcaaaattagtt-aaaaaatatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttcatgac 514  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||  | | ||| |||||||||||||||||||| ||| |    
T  36724650 gaacaatagtcaaaattagttaaaaaaatattt-ttgtcaccgaagagattactaggctgagtcatggactaggtcgctctctttaagacgttttatggc 36724748  T
Q  515 acttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactataggatctg 614  Q
    |||   ||||||||| ||||||||| || |||||||||| ||||| |||||||||||||||| | || | ||||| |||| ||||||| |||||||| ||    
T  36724749 actacccaaaattgtgcaagcagacaatcaaccacgacgcccccaagataaaacagcccagctataattgtatcaaagtcctattgcattataggatatg 36724848  T
Q  615 ttctggaaataca-cttcaaagtatggtgctaagaccattctaatattgcattgata 670  Q
    |||| |||||||| ||||||| |||||||||||||||| |||||||| | |||||||    
T  36724849 ttctagaaatacaccttcaaa-tatggtgctaagaccactctaatatggtattgata 36724904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 408 - 670
Target Start/End: Complemental strand, 23193384 - 23193122
Alignment:
Q  408 atatgttggaacaatagtcaaaattagttaaaaaatatttct-tgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgt 506  Q
    |||||||||||||||||||||||||||||||||| ||||| | ||||| |||||||||||||| ||||||||||| | ||| ||||||||| ||||||||    
T  23193384 atatgttggaacaatagtcaaaattagttaaaaa-tatttttctgtcatcgaagagattactacgctgagtcgcggactaggtcgctctctataagacgt 23193286  T
Q  507 ttcatgacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactat 606  Q
    |||||| |||    ||||||| | |||||||||||| |||||||||| ||||| ||||||||| | || | |||| | | | |||||| |||||||||||    
T  23193285 ttcatggcacaacccaaaattatgcaagcagactatcaaccacgacgcccccatgataaaacaactcatctacaaatgtcttagagtcctattgcactat 23193186  T
Q  607 aggatctgttctggaaatacac-ttcaaagtatggtgctaagaccattctaatattgcattgata 670  Q
    |||||||||||| ||||||||| |||||| |||||||||||||||| |||||||| | |||||||    
T  23193185 aggatctgttctagaaatacaccttcaaa-tatggtgctaagaccactctaatatggtattgata 23193122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 413 - 628
Target Start/End: Complemental strand, 24159954 - 24159740
Alignment:
Q  413 ttggaacaatagtcaaaattagttaaaaaatatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttcatg 512  Q
    |||||| |||||||||||||||||||||| |||||  | |||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||| |     
T  24159954 ttggaataatagtcaaaattagttaaaaa-tattttctatcaccgaagagattactaggctgagtcgcggactaggtcgctctctttaagacgtttcgta 24159856  T
Q  513 acacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactataggatc 612  Q
    | |||   ||||||||| |||||||||||| ||| |||||||||||||||||||||||| |||| |||||| ||||| |||  |||||||||||| ||||    
T  24159855 atactgcccaaaattgtgcaagcagactatcaacgacgacgtccccaggataaaacagctcagctacaactgtatcatagttctattgcactatatgatc 24159756  T
Q  613 tgttctggaaatacac 628  Q
    |||||| |||||||||    
T  24159755 tgttctagaaatacac 24159740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 411 - 670
Target Start/End: Complemental strand, 2493976 - 2493719
Alignment:
Q  411 tgttggaacaatagtcaaaattagttaaaaaatatttct-tgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttc 509  Q
    ||||||||||||| ||||||||||||||||| ||||| | ||  |||||||||||||||||| ||||||||  | ||| |||||||||||||||||||||    
T  2493976 tgttggaacaataatcaaaattagttaaaaa-tatttatctgcaaccgaagagattactaggttgagtcgcaaactaggtcgctctctttaagacgtttc 2493878  T
Q  510 atgacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactatagg 609  Q
     || ||||   ||||||||| |||||| ||||| ||||||| || ||||||||||||||| | |||| ||||   ||||  | || ||||||||||||||    
T  2493877 gtggcactgcccaaaattgtgcaagcaaactatcaaccacggcgcccccaggataaaacaactcagctacaatcgtatc--aatcctattgcactatagg 2493780  T
Q  610 atctgttctggaaatacac-ttcaaagtatggtgctaagaccattctaatattgcattgata 670  Q
     |||||||| ||||||||| |||||| ||||||||||||||||||||||||| | |||||||    
T  2493779 gtctgttctagaaatacacattcaaa-tatggtgctaagaccattctaatatggtattgata 2493719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 418 - 670
Target Start/End: Original strand, 32987185 - 32987437
Alignment:
Q  418 acaatagtcaaaattagttaaaaaatatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttcatgacact 517  Q
    |||||||||||||||||||||||| || || |||||| |||||||||||||| ||||||||||| | ||| || |||||||||||| ||||  || ||||    
T  32987185 acaatagtcaaaattagttaaaaa-tagtttttgtcatcgaagagattactaagctgagtcgcggactaggtcactctctttaagatgttttgtggcact 32987283  T
Q  518 tttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactataggatctgttc 617  Q
        |||||||| |||||||||||| || || |||| ||| |||| ||||||| ||| | |||| | |||||||||| |||||||||||| ||||| ||     
T  32987284 gcctaaaattgtgcaagcagactatcaatcatgacgcccctaggagaaaacagtccaactacaattgtatcagagtcctattgcactatatgatctcttt 32987383  T
Q  618 tggaaataca-cttcaaagtatggtgctaagaccattctaatattgcattgata 670  Q
    | |||||||| ||||||  ||||||||||||| || || ||||| | |||||||    
T  32987384 tagaaatacatcttcaatatatggtgctaagatcactccaatatggtattgata 32987437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 520 - 627
Target Start/End: Complemental strand, 28858112 - 28858005
Alignment:
Q  520 tcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactataggatctgttctg 619  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||| ||| |||| | |||| ||||| |||| ||||||||||||||||||| |||     
T  28858112 tcaaaattgtgcaagcagactatcaaccacgacgtccccaggataaaatagctcagctaaaactgtatcaaagtcctattgcactataggatctgctcta 28858013  T
Q  620 gaaataca 627  Q
    ||||||||    
T  28858012 gaaataca 28858005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 493 - 660
Target Start/End: Complemental strand, 25661899 - 25661732
Alignment:
Q  493 tctctttaagacgtttcatgacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagag 592  Q
    ||||||||||||||||  || ||||   ||||||||| |||| ||||||| ||||| |||| ||  ||||||||||||| |||| |||| | ||||||||    
T  25661899 tctctttaagacgttttgtggcactacccaaaattgtgcaagtagactatcaaccatgacgcccttaggataaaacagctcagctacaattgtatcagag 25661800  T
Q  593 tcttattgcactataggatctgttctggaaataca-cttcaaagtatggtgctaagaccattctaatat 660  Q
    || |||||||||||||||| |||||| |||||||| ||||||| ||||| |||||||||| || |||||    
T  25661799 tcctattgcactataggatatgttctagaaatacaccttcaaa-tatggggctaagaccactccaatat 25661732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 464 - 583
Target Start/End: Complemental strand, 19799118 - 19798998
Alignment:
Q  464 ttactaggctgagtcgcgtattagttcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccagga 562  Q
    |||||||| |||||| || || || ||||||||||||||||||||| || |||| | ||||||||| |||| |||||||| ||||||| || | ||||||    
T  19799118 ttactaggttgagtcacg-atcagatcgctctctttaagacgtttcgtggcactatccaaaattgtgcaagacagactatcaaccacgccgcctccagga 19799020  T
Q  563 taaaac-agcccagcaacaact 583  Q
    |||||| |||||||| ||||||    
T  19799019 taaaacaagcccagctacaact 19798998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 569
Target Start/End: Original strand, 12260010 - 12260091
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| |||||||   ||||||||| |||| |||||||| ||||||| ||||   |||||||||||    
T  12260010 tcgctctctttaagacgtttcgtgacactgcccaaaattgtgcaagacagactatcaaccacgccgtctttaggataaaaca 12260091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 411 - 441
Target Start/End: Complemental strand, 28858189 - 28858159
Alignment:
Q  411 tgttggaacaatagtcaaaattagttaaaaa 441  Q
    |||||||||||||||||||||||||||||||    
T  28858189 tgttggaacaatagtcaaaattagttaaaaa 28858159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 23192898 - 23192817
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || ||||   ||||||||| ||| ||||||||| ||||||| |  | |||||||||||||    
T  23192898 tcgctctctttaagacgtttcgtggcactgcccaaaattgtacaaggcagactatcaaccacgcctcctccaggataaaaca 23192817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 569
Target Start/End: Complemental strand, 33301257 - 33301180
Alignment:
Q  493 tctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||| || ||||   ||||||||| |||| |||||||| ||||||| || | |||||||||||||    
T  33301257 tctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaaca 33301180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 47451306 - 47451225
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    |||||||||||||||||||||||| ||||    |||||||| |||| |||||||| ||||||| || | ||| |||||||||    
T  47451306 tcgctctctttaagacgtttcatggcactgccaaaaattgtgcaagacagactatcaaccacgccgcctccaagataaaaca 47451225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 47455467 - 47455386
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || || | | ||||||||| |||| |||| ||| ||||||| || | |||||||||||||    
T  47455467 tcgctctctttaagacgtttcgtggcaatgtccaaaattgtgcaagacagattatcaaccacgccgcctccaggataaaaca 47455386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 140; Significance: 6e-73; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 408 - 670
Target Start/End: Complemental strand, 48435988 - 48435727
Alignment:
Q  408 atatgttggaacaatagtcaaaattagttaaaaaatatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtt 507  Q
    |||| ||||||||||| ||||||||||||||||| |||||   ||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||    
T  48435988 atattttggaacaatactcaaaattagttaaaaa-tattttccgtcaccgaagagattactaggctgagtcgcggactaggtcgctctctttaagacgtt 48435890  T
Q  508 tcatgacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactata 607  Q
    || ||||||| |||||||| || |||||||||||| |||||||||||||||||||||||||||| |||| |||| | |||||||||| ||||||| || |    
T  48435889 tcgtgacactgttcaaaatagtgcaagcagactatcaaccacgacgtccccaggataaaacagctcagctacaattgtatcagagtcctattgcattaaa 48435790  T
Q  608 ggatctgttctggaaatacac-ttcaaagtatggtgctaagaccattctaatattgcattgata 670  Q
    ||||||||| | ||||||||| |||||| |||||||||||||||| |||||||| | |||||||    
T  48435789 ggatctgttttagaaatacaccttcaaa-tatggtgctaagaccactctaatatggtattgata 48435727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 411 - 660
Target Start/End: Original strand, 16982930 - 16983180
Alignment:
Q  411 tgttggaacaatagtcaaaattagttaaaaaatatt-tcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttc 509  Q
    |||||||||||||||||||||||||||||||| ||  | ||||||||||||| |||| |||||||| ||||| | ||| ||||||| |||||||||||||    
T  16982930 tgttggaacaatagtcaaaattagttaaaaaaaataattttgtcaccgaagatattagtaggctgattcgcggactaggtcgctctttttaagacgtttc 16983029  T
Q  510 atgacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactatagg 609  Q
    |||||||| | |||||||||  ||| ||| ||| |||||||| ||||||||||||||||| |||||| |||||| ||||| |||| ||||||||||||||    
T  16983030 atgacactgtccaaaattgtgaaagaagaatatcaaccacgatgtccccaggataaaacaacccagctacaactgtatcaaagtcctattgcactatagg 16983129  T
Q  610 atctgttctggaaataca-cttcaaagtatggtgctaagaccattctaatat 660  Q
    ||||||||| |||||||| ||||||| |||||||||||||||| ||||||||    
T  16983130 atctgttctagaaatacaccttcaaa-tatggtgctaagaccactctaatat 16983180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 417 - 660
Target Start/End: Complemental strand, 12156633 - 12156390
Alignment:
Q  417 aacaatagtcaaaattagttaaaaaatatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttcatgacac 516  Q
    |||||||||||||||||||||||||||| ||  ||||||| |||||||||||||| || |||||| | ||| |  |||| ||||||||||||||||||||    
T  12156633 aacaatagtcaaaattagttaaaaaatagtt--tgtcaccaaagagattactaggttgtgtcgcggactagatttctct-tttaagacgtttcatgacac 12156537  T
Q  517 ttttcaaaattgtt---caagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactataggatct 613  Q
    |  |||||||||||   |||||||||||| |||||||||||||||| |||||||||| ||||   ||||  |||||||||| ||||| |||||| |||||    
T  12156536 tactcaaaattgttgtacaagcagactatcaaccacgacgtccccatgataaaacagtccagttgcaaccgtatcagagtcatattgtactatatgatct 12156437  T
Q  614 gttctggaaataca-cttcaaagtatggtgctaagaccattctaatat 660  Q
    | ||| |||||||| |||| || |||||||||||||||| ||||||||    
T  12156436 gatctagaaatacaccttctaa-tatggtgctaagaccactctaatat 12156390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 411 - 595
Target Start/End: Original strand, 48432346 - 48432529
Alignment:
Q  411 tgttggaacaatagtcaaaattagttaaaaaatatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttca 510  Q
    ||||| |||||||||||||||||||||||||   ||||| ||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||      
T  48432346 tgttgcaacaatagtcaaaattagttaaaaatactttct-gtcaccgaagagattactaggctgagtcgcggactaggtcgctctctttaagacgttttg 48432444  T
Q  511 tgacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtct 595  Q
    || ||||   |||||||||  || |||||||| |||||||||||||||| |||||||||||| ||| |||||| |||||||||||    
T  48432445 tggcactgcccaaaattgtgaaaacagactatcaaccacgacgtccccaagataaaacagcctagctacaactgtatcagagtct 48432529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 411 - 576
Target Start/End: Original strand, 4662120 - 4662286
Alignment:
Q  411 tgttggaacaatagtcaaaattagttaaaaa-atatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttc 509  Q
    |||||||| |||||||||||||||||||||| || ||| ||||||||||||||||||| | ||||||||| | | ||| ||||||||| ||||||||||     
T  4662120 tgttggaataatagtcaaaattagttaaaaatattttttttgtcaccgaagagattaccacgctgagtcgtggactaggtcgctctctctaagacgttta 4662219  T
Q  510 atgacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagc 576  Q
     ||  | |   ||||||| | |||||||||||| ||||| ||||||||||||||||||||| |||||    
T  4662220 gtggaaatgcccaaaattatgcaagcagactatcaaccatgacgtccccaggataaaacagtccagc 4662286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 439 - 628
Target Start/End: Original strand, 21100029 - 21100217
Alignment:
Q  439 aaaatatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttcatgacacttttcaaaattgttcaagcaga 538  Q
    ||||||||| | ||||||||||||| ||||||||||||||||| ||||  ||||| | |||||||| |||||||| | |    |||||||| ||| ||||    
T  21100029 aaaatatttttggtcaccgaagagactactaggctgagtcgcggattatgtcgctat-tttaagacttttcatgaaaatgccaaaaattgtgcaaacaga 21100127  T
Q  539 ctattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactataggatctgttctggaaatacac 628  Q
    |||||||||| |||| ||||| |||||||||| | ||| |||| | |||| |||||||| ||   | || |||||||||| |||||||||    
T  21100128 ctattaaccatgacgcccccaagataaaacagtctagctacaattgtatcggagtcttactgtgttgtaagatctgttctagaaatacac 21100217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 489 - 583
Target Start/End: Original strand, 3672598 - 3672694
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaac-agcccagcaacaact 583  Q
    |||||||||||||||||||||||| ||||   ||||||||| ||| ||||||||| ||||||| || | |||||||||||| |||||||| ||||||    
T  3672598 tcgctctctttaagacgtttcatggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaacaagcccagctacaact 3672694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 489 - 583
Target Start/End: Original strand, 3692630 - 3692726
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaac-agcccagcaacaact 583  Q
    |||||||||||||||||||||||| ||||   ||||||||| ||| ||||||||| ||||||| || | |||||||||||| |||||||| ||||||    
T  3692630 tcgctctctttaagacgtttcatggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaacaagcccagctacaact 3692726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 588 - 670
Target Start/End: Complemental strand, 48432282 - 48432200
Alignment:
Q  588 cagagtcttattgcactataggatctgttctggaaataca-cttcaaagtatggtgctaagaccattctaatattgcattgata 670  Q
    ||||||| ||||||||| ||||||||||||| |||||||| ||||||| ||||||| |||||||| |||||||| | |||||||    
T  48432282 cagagtcctattgcactgtaggatctgttctagaaatacaccttcaaa-tatggtgttaagaccactctaatatggtattgata 48432200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 489 - 569
Target Start/End: Original strand, 18467237 - 18467318
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || ||||   ||||||||| |||| |||||||||||||||| || | |||||||||||||    
T  18467237 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactattaaccacgccgcctccaggataaaaca 18467318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 483 - 548
Target Start/End: Complemental strand, 3657327 - 3657261
Alignment:
Q  483 attagttcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaacca 548  Q
    ||||| ||||||||||||||||||||| || |||| ||||||||||| |||| |||||||| |||||    
T  3657327 attagatcgctctctttaagacgtttcgtggcactgttcaaaattgtgcaagacagactatcaacca 3657261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 758449 - 758368
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || ||||   ||||||||| ||| ||||||||| ||||||| || | |||||||||||||    
T  758449 tcgctctctttaagacgtttcgtggcactacccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 758368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 12965954 - 12965873
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    |||||||||||||||||||| ||| ||||   ||||||||| |||| |||||||| ||||||| || | |||||||||||||    
T  12965954 tcgctctctttaagacgttttatggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaaca 12965873  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 23666204 - 23666123
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || ||||   ||||||||| ||| ||||||||| ||||||| || | |||||||||||||    
T  23666204 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 23666123  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 24038452 - 24038371
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || ||||   ||||||||| ||| ||||||||| ||||||| || | |||||||||||||    
T  24038452 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 24038371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 39775809 - 39775728
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || ||||   ||||||||| ||| ||||||||| ||||||| || | |||||||||||||    
T  39775809 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 39775728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 569
Target Start/End: Original strand, 55431327 - 55431408
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| ||||||| |  |||||| | ||| ||||||||| ||||||| || | |||||||||||||    
T  55431327 tcgctctctttaagacgtttcgtgacactgtcaaaaattatgcaaggcagactatcaaccacgccgcctccaggataaaaca 55431408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 494 - 583
Target Start/End: Complemental strand, 32474756 - 32474665
Alignment:
Q  494 ctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaac-agcccagcaacaact 583  Q
    |||| ||||||||||| || ||||   ||||||||| |||| |||||||| ||||||| |||| |||||||||||| |||||||| ||||||    
T  32474756 ctctctaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgtctccaggataaaacaagcccagctacaact 32474665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 549
Target Start/End: Original strand, 3033656 - 3033717
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccac 549  Q
    |||||||||||||||||||||||| ||||   ||||||||| ||| ||||||||| ||||||    
T  3033656 tcgctctctttaagacgtttcatggcactgcccaaaattgtgcaaggcagactatcaaccac 3033717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 7571299 - 7571218
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || ||||   ||||||||| |||| |||||||| || |||| || | |||||||||||||    
T  7571299 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaatcacgccgcctccaggataaaaca 7571218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 569
Target Start/End: Original strand, 8069692 - 8069772
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || ||| | || ||||||| |||| |||||||| ||||||| || | |||||||||||||    
T  8069692 tcgctctctttaagacgtttcgtggcac-tgtccaaattgtgcaagacagactatcaaccacgccgcctccaggataaaaca 8069772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 569
Target Start/End: Original strand, 8883182 - 8883263
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || ||||   ||||||||| |||| |||||||| |||||||  | | |||||||||||||    
T  8883182 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgctgcctccaggataaaaca 8883263  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 12112722 - 12112641
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || |||| | |||| |||| |||| |||||||| ||||||  || | |||||||||||||    
T  12112722 tcgctctctttaagacgtttcgtggcactgtccaaagttgtgcaagacagactatcaaccacaccgcctccaggataaaaca 12112641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 587 - 660
Target Start/End: Complemental strand, 28243504 - 28243431
Alignment:
Q  587 tcagagtcttattgcactataggatctgttctggaaatacacttcaaagtatggtgctaagaccattctaatat 660  Q
    |||||||| |||| ||||||| ||||| |||| |||| ||||||  || ||||||||||||| || ||||||||    
T  28243504 tcagagtcctattacactataagatctattctagaaacacacttttaaatatggtgctaagatcactctaatat 28243431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 569
Target Start/End: Complemental strand, 49971501 - 49971424
Alignment:
Q  493 tctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||| || |||| | ||||||||| ||| ||||||||| || |||| || | |||||||||||||    
T  49971501 tctctttaagacgtttcgtggcactatccaaaattgtgcaaggcagactatcaatcacgccgcctccaggataaaaca 49971424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 9e-72; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 411 - 628
Target Start/End: Complemental strand, 33723077 - 33722861
Alignment:
Q  411 tgttggaacaatagtcaaaattagttaaaaaatatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttca 510  Q
    ||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||| | ||| || ||||||||||||||||||     
T  33723077 tgttggaacaatagtcaaaattagttaaaaa-tattttctgtcaccgaagagattactaggctgagtcgcggactaggtcactctctttaagacgtttcg 33722979  T
Q  511 tgacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactatagga 610  Q
    ||||||| | ||||||||| ||||||||| ||  |||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||| ||    
T  33722978 tgacactgtccaaaattgtgcaagcagaccatcgaccacgacgtccccaggataaaacagcccagctacaactgtatcagagtcctattgcactataaga 33722879  T
Q  611 tctgttctggaaatacac 628  Q
    |||||||| |||||||||    
T  33722878 tctgttctagaaatacac 33722861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 423 - 628
Target Start/End: Original strand, 20513055 - 20513260
Alignment:
Q  423 agtcaaaattagttaaaaaatatttct-tgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttcatgacacttttc 521  Q
    ||||| ||||||||||||| ||||| | |||||  ||||||||||||||||||||||| | | ||| ||||||||||||||| ||||| || ||||  ||    
T  20513055 agtcagaattagttaaaaa-tatttttctgtcattgaagagattactaggctgagtcgtggactaggtcgctctctttaagatgtttcgtggcactgctc 20513153  T
Q  522 aaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactataggatctgttctgga 621  Q
    |||||||| |||||||||||| ||||||||||| |||||||||||||| | |||| |||||| |||||||||| ||||||||||||||||||||||| ||    
T  20513154 aaaattgtgcaagcagactatcaaccacgacgttcccaggataaaacaactcagctacaactgtatcagagtcctattgcactataggatctgttctaga 20513253  T
Q  622 aatacac 628  Q
    |||||||    
T  20513254 aatacac 20513260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 411 - 628
Target Start/End: Complemental strand, 15020625 - 15020407
Alignment:
Q  411 tgttggaacaatagtcaaaattagttaaaaaa-tatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttc 509  Q
    |||||||||||||||||||||||||||||||| ||||   |||||||||||||  ||||||||||| ||||  | ||| | ||||||||||| |||||||    
T  15020625 tgttggaacaatagtcaaaattagttaaaaaaatattgtatgtcaccgaagagtctactaggctgaatcgcagactaggttgctctctttaaaacgtttc 15020526  T
Q  510 atgacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactatagg 609  Q
     ||||||||  ||||||||| ||| |||||||| ||||||||||  |||||||||||||||| || | |||| | ||||||||||| |||||||||||||    
T  15020525 gtgacacttcccaaaattgtgcaaacagactatcaaccacgacgctcccaggataaaacagcacaactacaattgtatcagagtctcattgcactatagg 15020426  T
Q  610 atctgttctggaaatacac 628  Q
    || |||||| |||||||||    
T  15020425 atatgttctagaaatacac 15020407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 411 - 670
Target Start/End: Complemental strand, 55081854 - 55081602
Alignment:
Q  411 tgttggaacaatagtcaaaattagttaaaaa-atatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttc 509  Q
    ||||||||||||||||||||||||||||||| || |||| ||||| |||||||||||  ||||||||||||| ||||| ||||||        ||||||     
T  55081854 tgttggaacaatagtcaaaattagttaaaaatatttttcctgtcatcgaagagattatcaggctgagtcgcggattaggtcgctc--------acgtttt 55081763  T
Q  510 atgacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactatagg 609  Q
     |  ||||  |||||||||| |||||||||||| ||||| ||||||| |||||||||||||| |||| |||||| |||||||||||||||| ||||||||    
T  55081762 gtagcactgctcaaaattgtacaagcagactatcaaccatgacgtcctcaggataaaacagctcagctacaactgtatcagagtcttattgtactatagg 55081663  T
Q  610 atctgttctggaaataca-cttcaaagtatggtgctaagaccattctaatattgcattgata 670  Q
    ||||||||| |||||||| |||| || |||||| ||||||||| || ||||| | |||||||    
T  55081662 atctgttctagaaatacaccttccaa-tatggttctaagaccactccaatatggtattgata 55081602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 411 - 628
Target Start/End: Complemental strand, 16596094 - 16595881
Alignment:
Q  411 tgttggaacaatagtcaaaattagttaaaaaa--tatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgttt 508  Q
    |||||||||||||||||||||| ||||||||   | ||| ||||||| |||||||||| |||||||||||||| ||||| ||||||||||||||||||||    
T  16596094 tgttggaacaatagtcaaaattggttaaaaatatttttttttgtcactgaagagattattaggctgagtcgcggattaggtcgctctctttaagacgttt 16595995  T
Q  509 catgacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactatag 608  Q
      || |||| | ||||||||| |||||||||| | |||||||||||||||||||||||||| | |||| ||||       ||| || ||||||||||||     
T  16595994 tgtggcactgtccaaaattgtgcaagcagactgtcaaccacgacgtccccaggataaaacaactcagctacaa------aagaatcctattgcactataa 16595901  T
Q  609 gatctgttctggaaatacac 628  Q
    |||||||||| |||||||||    
T  16595900 gatctgttctagaaatacac 16595881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 414 - 649
Target Start/End: Complemental strand, 40684986 - 40684752
Alignment:
Q  414 tggaacaatagtcaaaattagttaaaaaatatttct-tgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttcatg 512  Q
    |||||||||||| ||||||||||||||| ||||| | |||||  ||||| ||||||||| ||||| ||| |||||  |||||| ||||||||||||   |    
T  40684986 tggaacaatagttaaaattagttaaaaa-tatttttctgtcatggaagaaattactaggttgagttgcggattaggccgctctttttaagacgttttgcg 40684888  T
Q  513 acacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactataggatc 612  Q
      ||| |  ||||| || |||||||||||| || ||||||||||| ||||||||||| | || | |||||| |||||||||| |||| ||| |||| ||     
T  40684887 gtactgtctaaaatcgtgcaagcagactatcaatcacgacgtccc-aggataaaacaactcacctacaactgtatcagagtcctattacaccatagaatt 40684789  T
Q  613 tgttctggaaatacacttcaaagtatggtgctaagac 649  Q
    |||| |  |||||||| |  || ||||||||||||||    
T  40684788 tgttttataaatacacctttaaatatggtgctaagac 40684752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 438 - 651
Target Start/End: Complemental strand, 2575387 - 2575174
Alignment:
Q  438 aaaaatatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttcatgacacttttcaaaattgttcaagcag 537  Q
    |||||||||| |||||| |||| | ||||||||| |||||  || ||||| ||| ||||||||| ||||||  |  ||||    |||||| | |||||||    
T  2575387 aaaaatattttttgtcatcgaaaaaattactaggttgagttacgaattaggtcgttctctttaatacgttttgtagcactgcctaaaattatgcaagcag 2575288  T
Q  538 actattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactataggatctgttctggaaataca-cttcaaagt 636  Q
    | ||| ||||||||| |||| || | ||| |||| |||| ||||||||||| ||||| ||||||||||||| || ||||||  ||||||| ||||||| |    
T  2575287 aatatcaaccacgacttccctagtagaaagcagctcagctacaactatatctgagtcatattgcactatagaatatgttctaaaaatacaccttcaaa-t 2575189  T
Q  637 atggtgctaagacca 651  Q
    ||||| |||||||||    
T  2575188 atggtactaagacca 2575174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 420 - 660
Target Start/End: Complemental strand, 39992027 - 39991787
Alignment:
Q  420 aatagtcaaaattagttaaaaaatatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttcatgacacttt 519  Q
    |||||| |||||||||| |||||||||| | |||||| |||||||||||||| |||||||| |||||  | | |||||||||||  |||  |  ||||      
T  39992027 aatagttaaaattagttcaaaaatatttttggtcaccaaagagattactaggttgagtcgcatattaagttgttctctttaagatattttgtagcactac 39991928  T
Q  520 tc-aaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactataggatctgttct 618  Q
     | |||||||| ||| |||||||| ||| |||||| | ||| ||| ||||||  || | |||||| ||| | ||||||| |||| | ||||||| |||||    
T  39991927 ccaaaaattgtgcaatcagactataaactacgacgcctccaagat-aaacagtacaactacaactgtattatagtcttactgcattgtaggatccgttct 39991829  T
Q  619 ggaaataca-cttcaaagtatggtgctaagaccattctaatat 660  Q
     || ||| | ||||||| |||||||||||||||| ||||||||    
T  39991828 agatatagaccttcaaa-tatggtgctaagaccactctaatat 39991787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 489 - 569
Target Start/End: Original strand, 51697931 - 51698012
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||| |||||||||||||||||||||  |||||||||| ||| ||||||||| ||||||| || | |||||||||||||    
T  51697931 tcgctctttttaagacgtttcatgacactgctcaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 51698012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 464 - 542
Target Start/End: Original strand, 12878229 - 12878307
Alignment:
Q  464 ttactaggctgagtcgcgtattagttcgctctctttaagacgtttcatgacacttttcaaaattgttc-aagcagactat 542  Q
    |||||||| |||||| || || || ||||||||||||||||||||| ||||||||||||||||||| | |||||||||||    
T  12878229 ttactaggttgagtcacg-atcaggtcgctctctttaagacgtttcgtgacacttttcaaaattgtgcaaagcagactat 12878307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 489 - 583
Target Start/End: Original strand, 31273535 - 31273631
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaac-agcccagcaacaact 583  Q
    ||||||||||||||||||||| || ||||   ||||||||| |||| |||||||| ||||||| || | |||||||||||| |||||||| ||||||    
T  31273535 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaacaagcccagctacaact 31273631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 489 - 583
Target Start/End: Complemental strand, 37259958 - 37259862
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaac-agcccagcaacaact 583  Q
    ||||| ||||||||||||||| || ||||  |||||||||| ||| ||||||||| ||||||| || | |||||||||||| |||||||| ||||||    
T  37259958 tcgctttctttaagacgtttcgtggcactactcaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaacaagcccagctacaact 37259862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 464 - 534
Target Start/End: Complemental strand, 1151403 - 1151334
Alignment:
Q  464 ttactaggctgagtcgcgtattagttcgctctctttaagacgtttcatgacacttttcaaaattgttcaag 534  Q
    |||||||| ||||||||| || || || |||||||||||||||||||||||||| | ||||||||| ||||    
T  1151403 ttactaggttgagtcgcg-atcagatcactctctttaagacgtttcatgacactatccaaaattgtgcaag 1151334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 5271500 - 5271419
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || ||||   ||||||||| |||| |||||||| ||||||| || | |||||||||||||    
T  5271500 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaaca 5271419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 13522073 - 13521992
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || ||||   ||||||||| |||| |||||||| ||||||| || | |||||||||||||    
T  13522073 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaaca 13521992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 492 - 569
Target Start/End: Original strand, 31765903 - 31765981
Alignment:
Q  492 ctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    |||||||||||||||||| || ||||   ||||||||| |||| |||||||| ||||||| || | |||||||||||||    
T  31765903 ctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 31765981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 489 - 581
Target Start/End: Complemental strand, 37264645 - 37264551
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaac-agcccagcaacaa 581  Q
    ||||||||||||||||||||| || ||||   ||||||| | ||| ||||||||| ||||||| || | |||||||||||| |||||||| ||||    
T  37264645 tcgctctctttaagacgtttcgtggcactgcccaaaattatgcaaggcagactatcaaccacgccgcctccaggataaaacaagcccagctacaa 37264551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 569
Target Start/End: Original strand, 31269048 - 31269129
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || ||||    |||||||| ||| ||||||||| ||||||| || | |||||||||||||    
T  31269048 tcgctctctttaagacgtttcgtggcactgcctaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 31269129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 569
Target Start/End: Original strand, 47244262 - 47244343
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    |||| |||||||||||||||| || |||| ||||||||| || |||  ||||||| ||||||| || | |||||||||||||    
T  47244262 tcgccctctttaagacgtttcgtggcactgttcaaaattattgaagaaagactatcaaccacgccgcctccaggataaaaca 47244343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 5e-64; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 411 - 670
Target Start/End: Original strand, 35129566 - 35129824
Alignment:
Q  411 tgttggaacaatagtcaaaattagttaaaaaatatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttca 510  Q
    ||||||||||||||||||||||||||||||| |||||   |||| |||| |||||||||  |||||||||  | ||| ||||||||||||||||||||||    
T  35129566 tgttggaacaatagtcaaaattagttaaaaa-tattttccgtcatcgaaaagattactatactgagtcgcagactaggtcgctctctttaagacgtttca 35129664  T
Q  511 tgacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactatagga 610  Q
    || ||||   ||||||||| |||||||||||| ||||||||| ||  ||||||||||||| ||||| |||||| |||||||||| | |||||||||||||    
T  35129665 tggcactgcccaaaattgtgcaagcagactatcaaccacgacatcatcaggataaaacagtccagctacaactgtatcagagtccttttgcactatagga 35129764  T
Q  611 tctgttctggaaataca-cttcaaagtatggtgctaagaccattctaatattgcattgata 670  Q
    |||||||| |||||||| ||||||| ||||||||||||||||||||||||| | |||||||    
T  35129765 tctgttctagaaatacaccttcaaa-tatggtgctaagaccattctaatatggtattgata 35129824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 413 - 670
Target Start/End: Complemental strand, 32815220 - 32814962
Alignment:
Q  413 ttggaacaatagtcaaaattagttaaaaa-atatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttcat 511  Q
    ||||||||||||||||||||| ||||||| || ||| |||||| | || ||||||||||||| | ||||| | ||| |||  ||||||||||||||||      
T  32815220 ttggaacaatagtcaaaattaattaaaaatattttttttgtcatcaaaaagattactaggcttattcgcggactaggtcgtcctctttaagacgtttcgc 32815121  T
Q  512 gacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactataggat 611  Q
    | ||||   ||||||||| |||||||||||| |||||||||  |||||| ||||||||||||||| |||| | ||||| |||  ||||||||||||||||    
T  32815120 ggcactgcccaaaattgtgcaagcagactatcaaccacgacacccccagtataaaacagcccagctacaaatgtatcaaagttctattgcactataggat 32815021  T
Q  612 ctgttctggaaatacac-ttcaaagtatggtgctaagaccattctaatattgcattgata 670  Q
    ||||||| ||||||||| |||||| |||||||||||||||| | |||||| | |||||||    
T  32815020 ctgttctagaaatacaccttcaaa-tatggtgctaagaccactataatatggtattgata 32814962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 411 - 648
Target Start/End: Original strand, 14041627 - 14041863
Alignment:
Q  411 tgttggaacaatagtcaaaattagtt--aaaaaatatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgttt 508  Q
    ||||||||||||||||||||||||||  |||||||| || |||||| ||||||||||||||| || ||||||| ||||| ||||||||||||| ||||||    
T  14041627 tgttggaacaatagtcaaaattagtttaaaaaaataatt-ttgtcatcgaagagattactagacttagtcgcggattaggtcgctctctttaaaacgttt 14041725  T
Q  509 catgacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactatag 608  Q
    | |||||||    |||||||| || |||  |||| |||||||||| | ||| ||||||||||| |||  |||||| ||||| |||| |||||||||||||    
T  14041726 cgtgacactgcctaaaattgtgcatgcat-ctatcaaccacgacg-ctccaagataaaacagctcagttacaactgtatcaaagtcctattgcactatag 14041823  T
Q  609 gatctgttctggaaatacacttcaaagtatggtgctaaga 648  Q
    |||||||||| ||||||||| |  || |||||||||||||    
T  14041824 gatctgttctagaaatacaccttgaaatatggtgctaaga 14041863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 519 - 670
Target Start/End: Original strand, 14775629 - 14775779
Alignment:
Q  519 ttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactataggatctgttct 618  Q
    ||||||||||| |||||||||||| |||||||| | ||||||||||||||||| |||| || ||| ||||| |||| |||||||||||||||||||||||    
T  14775629 ttcaaaattgtgcaagcagactatcaaccacgatg-ccccaggataaaacagctcagctaccactgtatcaaagtcctattgcactataggatctgttct 14775727  T
Q  619 ggaaatacacttcaaagtatggtgctaagaccattctaatattgcattgata 670  Q
     |||| |||| |  || ||||||||||| |||| || ||||| | |||||||    
T  14775728 agaaagacacctttaaatatggtgctaaaaccactccaatatggtattgata 14775779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 432 - 570
Target Start/End: Complemental strand, 32551655 - 32551518
Alignment:
Q  432 tagttaaaaaatatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttcatgacacttttcaaaattgttc 531  Q
    |||||||||||||||||  |||| |||||| |||| |||||| ||||| | ||||   |||||| ||||| ||||||| ||| ||| ||||||||||| |    
T  32551655 tagttaaaaaatatttccggtcatcgaaga-attattaggctaagtcgtggattaagccgctctttttaatacgtttcgtgaaactgttcaaaattgtgc 32551557  T
Q  532 aagcagactattaaccacgacgtccccaggataaaacag 570  Q
    ||||||||||| |||||| ||| || || ||||||||||    
T  32551556 aagcagactatcaaccacaacgccctcatgataaaacag 32551518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 411 - 474
Target Start/End: Complemental strand, 7499291 - 7499228
Alignment:
Q  411 tgttggaacaatagtcaaaattagttaaaaaatatttcttgtcaccgaagagattactaggctg 474  Q
    ||||||||||||| | |||||||||||||||||||||  ||||| |||||||||||||||||||    
T  7499291 tgttggaacaataatgaaaattagttaaaaaatattttctgtcatcgaagagattactaggctg 7499228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 24589245 - 24589164
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||| ||||||| ||||||||| ||||||||| ||||  ||||||| ||||||| |||| |||||||||||||    
T  24589245 tcgctctctttaaaacgtttcgtgacactttccaaaattgtgcaagatagactatcaaccacgccgtctccaggataaaaca 24589164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 511 - 628
Target Start/End: Complemental strand, 29610974 - 29610857
Alignment:
Q  511 tgacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactatagga 610  Q
    ||||||| ||||||||||| |||||||||||| |||||||| | || |||||||||| |||||||| || | | | || ||||| || |||||| |||||    
T  29610974 tgacactattcaaaattgtgcaagcagactatcaaccacgatgacctcaggataaaatagcccagctacgattgtttcggagtcctactgcactgtagga 29610875  T
Q  611 tctgttctggaaatacac 628  Q
    || ||| | |||||||||    
T  29610874 tccgttatagaaatacac 29610857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 2700187 - 2700106
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || |||| ||||||||||| |||| |||||||| ||||||| ||   |||||||||||||    
T  2700187 tcgctctctttaagacgtttcgtggcactgttcaaaattgtgcaagacagactatcaaccacgccgcttccaggataaaaca 2700106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 489 - 569
Target Start/End: Original strand, 21309045 - 21309126
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaaca 569  Q
    |||||||||||||||||||||||| ||||   ||||||||| ||| ||||||||| ||||||| || | |||||||||||||    
T  21309045 tcgctctctttaagacgtttcatggcactgcccaaaattgtgcaatgcagactatcaaccacgccgcctccaggataaaaca 21309126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 33687684 - 33687603
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || ||||   ||||||||| |||| |||||||| ||||| | |||| |||||||||||||    
T  33687684 tcgctctctttaagacgtttcgtggcactggccaaaattgtgcaagacagactatcaaccatgccgtctccaggataaaaca 33687603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 495 - 569
Target Start/End: Complemental strand, 17964634 - 17964559
Alignment:
Q  495 tctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||| || |||| | ||||||||| |||| |||||||| ||||||| || | |||||||||||||    
T  17964634 tctttaagacgtttcgtggcactatccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 17964559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 464 - 569
Target Start/End: Complemental strand, 6407965 - 6407860
Alignment:
Q  464 ttactaggctgagtcgcgtattagttcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccagga 562  Q
    |||||||| |||||| || || || |||||||||| |||||||||| || ||||   ||||||||| ||| ||||||||| ||||||| || | ||||||    
T  6407965 ttactaggttgagtcacg-atcaggtcgctctcttgaagacgtttcgtggcactgcccaaaattgtacaaagcagactatcaaccacgccgcctccagga 6407867  T
Q  563 taaaaca 569  Q
    |||||||    
T  6407866 taaaaca 6407860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 492 - 569
Target Start/End: Original strand, 12688988 - 12689066
Alignment:
Q  492 ctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    |||||||||||||||||  ||| |||   ||||||||| |||| |||||||| ||||||| |||| |||||||||||||    
T  12688988 ctctctttaagacgttttgtgatactgcccaaaattgtgcaaggcagactatcaaccacgccgtctccaggataaaaca 12689066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 411 - 500
Target Start/End: Original strand, 14775534 - 14775623
Alignment:
Q  411 tgttggaacaatagtcaaaattagttaaaaa-atatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctcttta 500  Q
    |||||||| |||||||||||||||||||||| || |||| ||| ||  |||||||||  ||||||||||||| | ||| ||| ||||||||    
T  14775534 tgttggaataatagtcaaaattagttaaaaatatttttc-tgtaactaaagagattataaggctgagtcgcggaataggtcgttctcttta 14775623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 495 - 583
Target Start/End: Complemental strand, 16836231 - 16836141
Alignment:
Q  495 tctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaac-agcccagcaacaact 583  Q
    ||||||||||||||| || ||||   ||||||||| |||| |||||||| ||||||| || | |||||||||||| |||||||| ||||||    
T  16836231 tctttaagacgtttcgtggcactgcccaaaattgtacaaggcagactatcaaccacgccgcctccaggataaaacaagcccagctacaact 16836141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 11570830 - 11570749
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || ||||   ||||||||| ||| |||||| || ||||||| || | |||||||||||||    
T  11570830 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagacaatcaaccacgccgcctccaggataaaaca 11570749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 569
Target Start/End: Complemental strand, 11614169 - 11614092
Alignment:
Q  493 tctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||| |||||| ||| ||||  |||||||||| |||| |||||||| ||||||| || | |||||||||||||    
T  11614169 tctctttaaaacgttttatggcactgctcaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 11614092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 440
Target Start/End: Complemental strand, 29611015 - 29610986
Alignment:
Q  411 tgttggaacaatagtcaaaattagttaaaa 440  Q
    ||||||||||||||||||||||||||||||    
T  29611015 tgttggaacaatagtcaaaattagttaaaa 29610986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 1e-61; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 411 - 670
Target Start/End: Complemental strand, 44957595 - 44957336
Alignment:
Q  411 tgttggaacaatagtcaaaattagttaaaaaatatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttca 510  Q
    |||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||  | | ||| ||| ||||||||||||||||      
T  44957595 tgttggaacaatagtcaaaattagttaaaaaattatttttgtcaccgaagagattactaggctgagtcatggactaggtcgttctctttaagacgttttg 44957496  T
Q  511 tgacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactatagga 610  Q
    || ||||    |||||||| |||||||||||| ||||||||| || |||||||||||||| || || |||||| |||||||||| ||||||||||||  |    
T  44957495 tggcactgcaaaaaattgtgcaagcagactatcaaccacgacatctccaggataaaacagtcctgctacaactgtatcagagtcctattgcactatataa 44957396  T
Q  611 tctgttctggaaatacac-ttcaaagtatggtgctaagaccattctaatattgcattgata 670  Q
    |||||||| ||||||||| |||||| |||||||||||||||| ||||||||  ||||||||    
T  44957395 tctgttctagaaatacaccttcaaa-tatggtgctaagaccactctaatatgacattgata 44957336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 411 - 660
Target Start/End: Original strand, 14104528 - 14104776
Alignment:
Q  411 tgttggaacaatagtcaaaattagttaaaaaatatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttca 510  Q
    ||||||||||||||||||||||||||||||| |||||  ||||| |||| | ||||||||||||||||||| | ||| |||||||||||||||||||||     
T  14104528 tgttggaacaatagtcaaaattagttaaaaa-tattttctgtcatcgaacaaattactaggctgagtcgcggactaggtcgctctctttaagacgtttcg 14104626  T
Q  511 tgacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactatagga 610  Q
    || ||||  |||||||||| ||| || ||||| |||||||||||||||| |||||||||||| ||| |||||| |||||||||| |||||||||||||||    
T  14104627 tgtcactgctcaaaattgtgcaaacaaactatcaaccacgacgtccccatgataaaacagcctagctacaactgtatcagagtcctattgcactatagga 14104726  T
Q  611 tctgttctggaaataca-cttcaaagtatggtgctaagaccattctaatat 660  Q
    | |||||| |||||||| |||| || |||||| ||||||||| || |||||    
T  14104727 tatgttctagaaatacaccttccaa-tatggttctaagaccactccaatat 14104776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 411 - 505
Target Start/End: Complemental strand, 13060526 - 13060433
Alignment:
Q  411 tgttggaacaatagtcaaaattagttaaaaaatatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacg 505  Q
    ||||| ||||||||||||||||||||||||| |||||  |||||||||||| |||| ||||||||||| || | ||| ||||| || ||||||||    
T  13060526 tgttgaaacaatagtcaaaattagttaaaaa-tattttatgtcaccgaagacattattaggctgagtcacggactaggtcgctttcattaagacg 13060433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 411 - 612
Target Start/End: Complemental strand, 41559178 - 41558978
Alignment:
Q  411 tgttggaacaatagtcaaaattagttaaaaaatatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttca 510  Q
    ||||||||||| | | |||||||||| ||||||||||   |||| | ||||||||| |||| ||||||||| ||||  ||||||||||||| ||||||      
T  41559178 tgttggaacaaaatttaaaattagttcaaaaatattttcagtcatcaaagagattattagg-tgagtcgcggattatgtcgctctctttaaaacgttttg 41559080  T
Q  511 tgacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactatagga 610  Q
    ||||||   ||||||||||  ||| | | ||| || ||||||||||||  ||||||||||  || |  ||||| ||||| ||||| |||||| | |||||    
T  41559079 tgacaccactcaaaattgtgtaagtaaattatcaatcacgacgtccccgtgataaaacagttcaactgcaactgtatcaaagtctaattgcattgtagga 41558980  T
Q  611 tc 612  Q
    ||    
T  41558979 tc 41558978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 489 - 583
Target Start/End: Complemental strand, 9180805 - 9180709
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaac-agcccagcaacaact 583  Q
    ||||||||||||||||||||| || |||| | ||||||||| ||| ||||||||| ||||||| || | |||||||||||| |||||||| ||||||    
T  9180805 tcgctctctttaagacgtttcgtggcactgtccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaacaagcccagctacaact 9180709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 489 - 583
Target Start/End: Original strand, 18344445 - 18344541
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaac-agcccagcaacaact 583  Q
    ||||||||||||||||||||| || ||||   ||||||||| |||| |||||||||||||||| || | |||||||||||| |||||||| ||||||    
T  18344445 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactattaaccacgccggctccaggataaaacaagcccagctacaact 18344541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 491 - 583
Target Start/End: Complemental strand, 9189882 - 9189788
Alignment:
Q  491 gctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaac-agcccagcaacaact 583  Q
    ||||||||||||||||||| || |||| | ||||||||| ||| ||||||||| ||||||| || | |||||||||||| |||||||| ||||||    
T  9189882 gctctctttaagacgtttcgtggcactgtccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaacaagcccagctacaact 9189788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 489 - 569
Target Start/End: Original strand, 12796939 - 12797020
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||  || ||||   |||||||||||||| |||||||| ||||||| |||| |||||||||||||    
T  12796939 tcgctctctttaagacgttttgtggcactgcccaaaattgttcaagacagactatcaaccacgccgtctccaggataaaaca 12797020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 489 - 569
Target Start/End: Original strand, 30658277 - 30658358
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || ||||  |||||||||| ||| ||||||||| ||||||| || | |||||||||||||    
T  30658277 tcgctctctttaagacgtttcgtggcactactcaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 30658358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 489 - 583
Target Start/End: Complemental strand, 25478378 - 25478282
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaac-agcccagcaacaact 583  Q
    ||||||||||||||||||||| |||||||   ||||||||| ||| ||||||||| ||||||| || | |||| ||||||| |||||||| ||||||    
T  25478378 tcgctctctttaagacgtttcgtgacactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccagaataaaacaagcccagctacaact 25478282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 1935074 - 1934993
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || ||||   ||||||||| |||| |||||||| ||||||| || | |||||||||||||    
T  1935074 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaaca 1934993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 10160805 - 10160724
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || ||||   ||||||||| ||| ||||||||| ||||||| || | |||||||||||||    
T  10160805 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 10160724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 19892547 - 19892466
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || |||| | ||||||||| |||  |||||||| ||||||| || | |||||||||||||    
T  19892547 tcgctctctttaagacgtttcctggcactgtccaaaattgtgcaacacagactatcaaccacgccgcctccaggataaaaca 19892466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 569
Target Start/End: Original strand, 31326753 - 31326834
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaaca 569  Q
    |||||||||||||||||||||||| ||||   ||||||||| ||| ||||||||| ||||||| |  | |||||||||||||    
T  31326753 tcgctctctttaagacgtttcatgccactgcccaaaattgtgcaaggcagactatcaaccacgccacctccaggataaaaca 31326834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 489 - 583
Target Start/End: Complemental strand, 25497406 - 25497310
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaac-agcccagcaacaact 583  Q
    ||||||||||||||||||||| | |||||   |||| |||| |||| |||||||| ||||||| || | |||||||||||| |||||||| ||||||    
T  25497406 tcgctctctttaagacgtttcgtaacactgcccaaatttgtgcaagtcagactatcaaccacgccgcctccaggataaaacaagcccagctacaact 25497310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 489 - 583
Target Start/End: Original strand, 30650943 - 30651039
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaac-agcccagcaacaact 583  Q
    ||||||||||||||||||||| || ||||   ||||||||| ||| ||||||||| ||||||| || | ||| |||||||| |||||||| ||||||    
T  30650943 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaagataaaacaagcccagctacaact 30651039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 489 - 567
Target Start/End: Original strand, 29677395 - 29677474
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttc-aagcagactattaaccacgacgtccccaggataaaa 567  Q
    ||||||||||||||||||||| || ||||   ||||||||| | ||||||||||| ||||||| || | |||||||||||    
T  29677395 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaagcagactatcaaccacgccgcctccaggataaaa 29677474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 489 - 550
Target Start/End: Original strand, 28603312 - 28603374
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacg 550  Q
    ||||||||||||| ||||||| ||||||| | ||||||||| |||| |||||||| |||||||    
T  28603312 tcgctctctttaaaacgtttcgtgacactgtccaaaattgtgcaagacagactatcaaccacg 28603374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 569
Target Start/End: Original strand, 35601936 - 35602017
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||| ||||||||||||| || |||| | ||||||||| |||| |||| ||| ||||||| || | |||||||||||||    
T  35601936 tcgctctttttaagacgtttcgtggcactgtccaaaattgtgcaagacagagtatcaaccacgccgcctccaggataaaaca 35602017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 2e-60; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 414 - 670
Target Start/End: Original strand, 19954211 - 19954468
Alignment:
Q  414 tggaacaatagtcaaaattagttaaaaa-atatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttcatg 512  Q
    |||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||| ||||||||  | ||| ||||||||||||||||||||  ||    
T  19954211 tggaacaatagtcaaaattagttaaaaatatattttctgtcaccgaagagattactaggttgagtcgcagactagatcgctctctttaagacgttttgtg 19954310  T
Q  513 acacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactataggatc 612  Q
     ||||   ||||||||| |||||||||||| |||||||||||||||  ||||||||||||||||  ||||| ||| |||||| |||||||||||||||||    
T  19954311 gcactgcccaaaattgtacaagcagactatcaaccacgacgtccccttgataaaacagcccagctgcaactgtataagagtcctattgcactataggatc 19954410  T
Q  613 tgttctggaaataca-cttcaaagtatggtgctaagaccattctaatattgcattgata 670  Q
    |||||| |||||||| |||| || ||||||||||||| || || ||||| | |||||||    
T  19954411 tgttctagaaatacaccttccaa-tatggtgctaagatcactccaatatggtattgata 19954468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 411 - 599
Target Start/End: Complemental strand, 4544410 - 4544221
Alignment:
Q  411 tgttggaacaatagtcaaaattagttaaaaaatatttctt--gtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgttt 508  Q
    |||| |||||||||||||||||||||||||| ||||| ||  |||||||||||||||||||||||||||| || | ||| ||||||||||||||||||||    
T  4544410 tgttagaacaatagtcaaaattagttaaaaa-tattttttcagtcaccgaagagattactaggctgagtcacggactaggtcgctctctttaagacgttt 4544312  T
Q  509 catgacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttatt 599  Q
    |||| ||||  |||||||||| |||| ||||||| |||||| ||||||| |||||||||||| ||||| |||||| |||||||||| ||||    
T  4544311 catggcactgctcaaaattgtgcaagtagactatcaaccactacgtccctaggataaaacagtccagctacaactgtatcagagtcctatt 4544221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 411 - 670
Target Start/End: Original strand, 2469910 - 2470170
Alignment:
Q  411 tgttggaacaatagtcaaaattagttaaaaaatatttct-tgtcaccgaagagattact-aggctgagtcgcgtattagttcgctctctttaagacgttt 508  Q
    ||||| |||||||||||||||| |||||||| ||||| | ||||||||||||||||  | |||| |||| ||| | ||| ||||||||||||||||||||    
T  2469910 tgttgaaacaatagtcaaaattggttaaaaa-tatttttctgtcaccgaagagatttatcaggcagagttgcgaactaggtcgctctctttaagacgttt 2470008  T
Q  509 catgacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactatag 608  Q
      || ||||  |||||||||| |||||||||||| ||| |||||||||||||||||||||| | |||| |||||| |||||||||| |||||||||||||    
T  2470009 tgtggcactgctcaaaattgtgcaagcagactatcaactacgacgtccccaggataaaacaacacagctacaactgtatcagagtcctattgcactatag 2470108  T
Q  609 gatctgttctggaaataca-cttcaaagtatggtgctaagaccattctaatattgcattgata 670  Q
    ||| |||||  |||||| | |||| || |||||| ||||||||| || ||||| | |||||||    
T  2470109 gatttgttcgagaaatataccttccaa-tatggttctaagaccactccaatatggtattgata 2470170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 417 - 628
Target Start/End: Original strand, 19949760 - 19949972
Alignment:
Q  417 aacaatagtcaaaattagttaaaaa-atatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttcatgaca 515  Q
    |||| |||||||||||||||||||| || |||  ||||||||||||||||||||||||||||| || | ||  ||||||||||||||| ||||| || ||    
T  19949760 aacagtagtcaaaattagttaaaaatattttttctgtcaccgaagagattactaggctgagtcacggactacgtcgctctctttaagaagtttcgtggca 19949859  T
Q  516 cttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactataggatctgt 615  Q
    ||   ||||||||  |||||||||||| ||||| ||||||| |||||||||||||| ||||  ||| | ||| ||| || ||||||||||||||||||||    
T  19949860 ctgcccaaaattgagcaagcagactatcaaccatgacgtcctcaggataaaacagctcagctgcaattgtataagaatcctattgcactataggatctgt 19949959  T
Q  616 tctggaaatacac 628  Q
    ||| |||||||||    
T  19949960 tctagaaatacac 19949972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 411 - 651
Target Start/End: Original strand, 34517179 - 34517417
Alignment:
Q  411 tgttggaacaatagtcaaaattagttaaaaaatatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttca 510  Q
    |||||||||||||||||||||||||| ||||||||||  |||||| |||||||||| |||| |||||| |  | ||| ||| |  ||||||||||||||     
T  34517179 tgttggaacaatagtcaaaattagtt-aaaaatattttatgtcactgaagagattattaggttgagtcacagagtagatcgtttcctttaagacgtttcg 34517277  T
Q  511 tgacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactatagga 610  Q
    || ||| | |||||||||| |||| ||||||| |||||||||| ||||| ||||||||| | || | |||||| |||||||||| || || | | || ||    
T  34517278 tggcac-tgtcaaaattgtgcaaggagactatcaaccacgacgcccccaagataaaacaactcaactacaactgtatcagagtcctactgtattgtaaga 34517376  T
Q  611 tctgttctggaaatacacttcaaagtatggtgctaagacca 651  Q
    | ||||||  ||||||||||  || ||| ||||||| ||||    
T  34517377 tatgttctaaaaatacactttcaaatattgtgctaaaacca 34517417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 456 - 628
Target Start/End: Original strand, 7145797 - 7145969
Alignment:
Q  456 cgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttcatgacacttttcaaaattgttcaagcagactattaaccacgacgtc 555  Q
    ||||||||||| |||| | ||||| | ||||  |||||||| |||| || |||  ||||||| || |||||||| |||||||||||| ||| |||||  |    
T  7145797 cgaagagattattaggttaagtcgtgaattaagtcgctctcgttaacacattttgtgacactgtttaaaattgtgcaagcagactatcaactacgacacc 7145896  T
Q  556 cccaggataaaacagcccagcaacaactatatcagagtcttattgcactataggatctgttctggaaatacac 628  Q
    | ||| |||||||||| |||| |||||| |||| ||||| || |||| | |||||| |||||| |||||||||    
T  7145897 cacagaataaaacagctcagctacaactgtatcggagtcctactgcattgtaggatatgttctagaaatacac 7145969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 411 - 574
Target Start/End: Original strand, 20072034 - 20072196
Alignment:
Q  411 tgttggaacaatagtcaaaattagttaaaaaatatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttca 510  Q
    |||| |||| ||||| ||||  |||| |||||||||||  |||| ||||||||||||| || | ||| ||  ||||| |||||||||||||||| ||||     
T  20072034 tgttcgaaccatagttaaaaaaagttcaaaaatatttccagtcatcgaagagattactgggataagttgcagattaggtcgctctctttaagacatttcg 20072133  T
Q  511 tgacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagccca 574  Q
    ||||| ||   |||||||| |||| ||| ||| |||||||||||| ||| ||||||||||||||    
T  20072134 tgacatttcctaaaattgtgcaagtagattatcaaccacgacgtctcca-gataaaacagccca 20072196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 561 - 651
Target Start/End: Original strand, 30778954 - 30779044
Alignment:
Q  561 gataaaacagcccagcaacaactatatcagagtcttattgcactataggatctgttctggaaatacacttcaaagtatggtgctaagacca 651  Q
    |||||||||||  ||| |||||| |||||||||| |||| |||||||||||||||||| |||||||||||  ||  |||||||||||||||    
T  30778954 gataaaacagcttagctacaactgtatcagagtcatattacactataggatctgttctagaaatacactttcaaaaatggtgctaagacca 30779044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 411 - 509
Target Start/End: Original strand, 30777026 - 30777123
Alignment:
Q  411 tgttggaacaatagtcaaaattagttaaaaaatatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttc 509  Q
    |||||||| |||||||||||| ||||||||| ||||| |||||| |||||| |||| |||| |||||| |  | ||| || ||||||||||||||||||    
T  30777026 tgttggaataatagtcaaaataagttaaaaa-tattttttgtcatcgaagaaattattaggttgagtcacagactaggtcactctctttaagacgtttc 30777123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 464 - 564
Target Start/End: Complemental strand, 28564926 - 28564826
Alignment:
Q  464 ttactaggctgagtcgcgtattagttcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccagga 562  Q
    |||||||| |||||| || || || ||||||||| ||| || ||||||||||||  ||||||||||||||| |||||||||||||||| ||||  |||||    
T  28564926 ttactaggttgagtcacg-atcaggtcgctctctataaaacatttcatgacactgctcaaaattgttcaagacagactattaaccacgccgtctgcagga 28564828  T
Q  563 ta 564  Q
    ||    
T  28564827 ta 28564826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 464 - 564
Target Start/End: Complemental strand, 28572549 - 28572449
Alignment:
Q  464 ttactaggctgagtcgcgtattagttcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccagga 562  Q
    |||||||| |||||| || || || ||||||||| ||| || ||||||||||||  ||||||||||||||| |||||||||||||||| ||||  |||||    
T  28572549 ttactaggttgagtcacg-atcaggtcgctctctataaaacatttcatgacactgctcaaaattgttcaagacagactattaaccacgccgtctgcagga 28572451  T
Q  563 ta 564  Q
    ||    
T  28572450 ta 28572449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 492 - 550
Target Start/End: Complemental strand, 2355537 - 2355478
Alignment:
Q  492 ctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacg 550  Q
    |||| ||||||||||||| ||||||||||||||||||| |||| |||||||| |||||||    
T  2355537 ctctttttaagacgtttcgtgacacttttcaaaattgtgcaagacagactatcaaccacg 2355478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 522 - 605
Target Start/End: Original strand, 28237840 - 28237923
Alignment:
Q  522 aaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcacta 605  Q
    |||||||| ||  |||||||| |||||||||||   |||||||||||| |||| | |||||| |||||||||| ||||||||||    
T  28237840 aaaattgtgcatacagactatcaaccacgacgttttcaggataaaacaacccaactacaactgtatcagagtcctattgcacta 28237923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 31449947 - 31449866
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || ||||   ||||||||| |||| |||||||| ||||||| || | |||||||||||||    
T  31449947 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaaca 31449866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 464 - 567
Target Start/End: Original strand, 1807462 - 1807565
Alignment:
Q  464 ttactaggctgagtcgcgtattagttcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccagga 562  Q
    |||||||| |||||| || | ||| ||||||||||||||||||||| |||||||   ||||||||| ||| ||||||||| ||||||| || | | ||||    
T  1807462 ttactaggttgagtcacg-actaggtcgctctctttaagacgtttcgtgacactgcccaaaattgtgcaaggcagactatcaaccacgccgcctctagga 1807560  T
Q  563 taaaa 567  Q
    |||||    
T  1807561 taaaa 1807565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 489 - 583
Target Start/End: Original strand, 34118480 - 34118576
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaac-agcccagcaacaact 583  Q
    |||||||||||||||||||||||| ||||   ||||||||| ||| ||||||||| ||||||| || |   |||||||||| |||||||| ||||||    
T  34118480 tcgctctctttaagacgtttcatggcactgcccaaaattgtgcaaggcagactatcaaccacgtcgcctttaggataaaacaagcccagctacaact 34118576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 489 - 583
Target Start/End: Complemental strand, 40125966 - 40125870
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaac-agcccagcaacaact 583  Q
    ||||||||||||||||||||| || ||||   ||||||||| ||| ||||||||| ||||||| || | ||| |||||||| |||||||| ||||||    
T  40125966 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaagataaaacaagcccagctacaact 40125870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 489 - 550
Target Start/End: Complemental strand, 1911050 - 1910988
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttc-aagcagactattaaccacg 550  Q
    ||||||||||||||||||||| || ||||  |||||||||| | ||||||||||| |||||||    
T  1911050 tcgctctctttaagacgtttcgtggcactagtcaaaattgtgcaaagcagactatcaaccacg 1910988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 15875749 - 15875668
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    |||||||||||| |||||||| || ||||   ||||||||| |||| |||||||| ||||||| || | |||||||||||||    
T  15875749 tcgctctctttaggacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 15875668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 569
Target Start/End: Original strand, 17793471 - 17793548
Alignment:
Q  493 tctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    |||||||||||||||||| ||||||  |||||||||| |||| || ||||| ||||||| | || ||| |||||||||    
T  17793471 tctctttaagacgtttcacgacactgctcaaaattgtacaagtcaaactatcaaccacgtcatctccacgataaaaca 17793548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 569
Target Start/End: Original strand, 19166648 - 19166729
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttca-agcagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || ||||   ||||||||| ||  ||||||||| ||||||| || | |||||||||||||    
T  19166648 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcacggcagactatcaaccacgccgcctccaggataaaaca 19166729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 44926004 - 44925923
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||| ||||||| || ||||   ||||||||| |||| |||||||| ||||||| || | |||||||||||||    
T  44926004 tcgctctctttaaaacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 44925923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 493 - 583
Target Start/End: Original strand, 33416565 - 33416657
Alignment:
Q  493 tctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaac-agcccagcaacaact 583  Q
    ||||||||||||||||| || ||||   ||||||||| |||| |||||||| ||||||| || | ||| |||||||| |||||||| ||||||    
T  33416565 tctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaagataaaacaagcccagctacaact 33416657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 1e-58; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 411 - 660
Target Start/End: Complemental strand, 6898514 - 6898266
Alignment:
Q  411 tgttggaacaatagtcaaaattagttaaaaaatatttct-tgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttc 509  Q
    |||| |||||| ||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||| | ||| ||||||||||||||| ||||     
T  6898514 tgttagaacaagagtcaaaattagttaaaaa-tatttttctgtcaccgaagagattactaggctgagtcgcggactagatcgctctctttaagatgtttt 6898416  T
Q  510 atgacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactatagg 609  Q
     || |||| | ||||||||| |||||||||||| |||||| ||||||||||||| ||||| ||||||||||||| |||||||||| ||||||||||||||    
T  6898415 gtggcactgtccaaaattgtgcaagcagactatcaaccacaacgtccccaggat-aaacaacccagcaacaactgtatcagagtcctattgcactatagg 6898317  T
Q  610 atctgttctggaaataca-cttcaaagtatggtgctaagaccattctaatat 660  Q
    |||||||||  ||||||| |||| || |||| ||||||||||| ||| ||||    
T  6898316 atctgttctaaaaatacaccttccaa-tatgatgctaagaccactcttatat 6898266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 411 - 670
Target Start/End: Complemental strand, 29478314 - 29478054
Alignment:
Q  411 tgttggaacaatagtcaaaa-ttagttaaaaa-atatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgttt 508  Q
    ||||||||||||||| |||| ||||||| ||| || ||||| |||| |||||||| ||||||||||||||| | | ||  |||||||||| |||||||||    
T  29478314 tgttggaacaatagtaaaaaattagttataaagatttttct-gtcatcgaagagactactaggctgagtcgtggactaagtcgctctcttcaagacgttt 29478216  T
Q  509 catgacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactatag 608  Q
    | || ||||   ||||||||| ||| |||||||| ||||| |||| || || ||||||| |||||||| |||||  ||||| |||| |||||||| | ||    
T  29478215 cgtggcactgcccaaaattgtgcaaacagactatcaaccatgacgcccacatgataaaatagcccagctacaacagtatcatagtcatattgcaccacag 29478116  T
Q  609 gatctgttctggaaatacac-ttcaaagtatggtgctaagaccattctaatattgcattgata 670  Q
    ||| |||||| ||||||||| |||||| |||||||||||||||| |||||||| | |||||||    
T  29478115 gatatgttctagaaatacaccttcaaa-tatggtgctaagaccactctaatatggtattgata 29478054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 411 - 656
Target Start/End: Complemental strand, 23616544 - 23616295
Alignment:
Q  411 tgttggaacaatagtcaaaattagttaaaaaatatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttca 510  Q
    ||||||||||||| |||||||||| ||||||||||||   ||||||||||| |||| ||||| |||||| | | ||  ||||||| |||||||  |||      
T  23616544 tgttggaacaataatcaaaattaggtaaaaaatattttcagtcaccgaagatattattaggcggagtcgtggactaaatcgctctttttaagatcttttt 23616445  T
Q  511 tgacactttt----caaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactat 606  Q
    ||  |||  |    ||||||||| |||||| ||||| ||||||||||||| || ||||||||| | || | |||| | ||||||| || || ||||||||    
T  23616444 tggtactgattgtccaaaattgtgcaagcatactatcaaccacgacgtcctcatgataaaacaactcaactacaattgtatcagaatcctactgcactat 23616345  T
Q  607 aggatctgttctggaaatacac-ttcaaagtatggtgctaagaccattcta 656  Q
    ||||||  |||| ||||| ||| |||||| |||||||||||||||| ||||    
T  23616344 aggatccattctagaaattcaccttcaaa-tatggtgctaagaccactcta 23616295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 427 - 549
Target Start/End: Complemental strand, 1289474 - 1289353
Alignment:
Q  427 aaaattagttaaaaaatatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttcatgacacttttcaaaat 526  Q
    ||||||||||||||| |||||   ||||||||||||||||||||| ||| ||||  | ||| ||||||||||||||||||||  |||||||  |||||||    
T  1289474 aaaattagttaaaaa-tattttcagtcaccgaagagattactaggttgaatcgcagaataggtcgctctctttaagacgttttgtgacactactcaaaat 1289376  T
Q  527 tgttcaagcagactattaaccac 549  Q
    | | |||||||||||| ||||||    
T  1289375 tatgcaagcagactatcaaccac 1289353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 538 - 660
Target Start/End: Complemental strand, 25832394 - 25832272
Alignment:
Q  538 actattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactataggatctgttctggaaatacacttcaaagta 637  Q
    ||||| |||||||||| ||||| ||||||||| |||| | |||||| |||||||||| |||| |||||||| ||||||| | |||||||||||  || ||    
T  25832394 actatcaaccacgacgcccccatgataaaacaacccacctacaactgtatcagagtcatattacactatagaatctgttatagaaatacacttttaaata 25832295  T
Q  638 tggtgctaagaccattctaatat 660  Q
    ||||| |||||||| || |||||    
T  25832294 tggtgttaagaccactccaatat 25832272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 561 - 651
Target Start/End: Complemental strand, 20130341 - 20130251
Alignment:
Q  561 gataaaacagcccagcaacaactatatcagagtcttattgcactataggatctgttctggaaatacacttcaaagtatggtgctaagacca 651  Q
    ||||||||| | || | |||||| ||||||||||||| || ||| ||||||| ||||  |||||||||||  || ||||||||||||||||    
T  20130341 gataaaacaactcaactacaactgtatcagagtcttactgtactgtaggatccgttcatgaaatacacttttaaatatggtgctaagacca 20130251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 464 - 569
Target Start/End: Complemental strand, 44423242 - 44423137
Alignment:
Q  464 ttactaggctgagtcgcgtattagttcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccagga 562  Q
    |||||||| |||||| || || || ||||||||||||||||||||| || ||||   ||||||||||||| ||||||||| ||| ||| || | ||||||    
T  44423242 ttactaggttgagtcacg-atcagatcgctctctttaagacgtttcgtggcactgaccaaaattgttcaaggcagactatcaactacgccgcctccagga 44423144  T
Q  563 taaaaca 569  Q
    |||||||    
T  44423143 taaaaca 44423137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 569
Target Start/End: Original strand, 4579522 - 4579603
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || ||||   ||||||||| ||| ||||||||| ||||||| || | |||||||||||||    
T  4579522 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 4579603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 9651048 - 9650967
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || ||||   ||||||||| |||| |||||||| ||||||| || | |||||||||||||    
T  9651048 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaaca 9650967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 569
Target Start/End: Original strand, 23866082 - 23866163
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || ||||   ||||||||| |||| |||||||| ||||||| || | |||||||||||||    
T  23866082 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaaca 23866163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 491 - 569
Target Start/End: Complemental strand, 44510756 - 44510677
Alignment:
Q  491 gctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||  || |||| | ||||||||| |||| |||||||| ||||||| || | |||||||||||||    
T  44510756 gctctctttaagacgttttgtggcactgtccaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaaca 44510677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 23247014 - 23246933
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||| ||||| || ||||   ||||||||| |||| |||||||| ||||||| || | |||||||||||||    
T  23247014 tcgctctctttaagatgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 23246933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 569
Target Start/End: Original strand, 26341213 - 26341294
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    |||||||||||||||| |||| || ||||   ||||||||| |||| |||||||| ||||||| || | |||||||||||||    
T  26341213 tcgctctctttaagacatttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 26341294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 489 - 529
Target Start/End: Original strand, 15642248 - 15642288
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgt 529  Q
    ||||||| ||||||||||||||||||||| | |||||||||    
T  15642248 tcgctctttttaagacgtttcatgacactatccaaaattgt 15642288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 2e-57; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 411 - 670
Target Start/End: Complemental strand, 18265664 - 18265404
Alignment:
Q  411 tgttggaacaatagtcaaaattagttaaaaa-atatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttc 509  Q
    ||||||||||||||||||||||||||||||  || |||  |||||||||||||||||||||||||||| ||| | ||| ||||||||||||||||||||     
T  18265664 tgttggaacaatagtcaaaattagttaaaagtattttttctgtcaccgaagagattactaggctgagtagcggactaggtcgctctctttaagacgtttt 18265565  T
Q  510 atgacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactatagg 609  Q
     |||||||    |||||||| ||| |||||||| |||||||||||||||| ||||||||||| |||| |||||| |||||||||||||||| ||| || |    
T  18265564 gtgacactgcctaaaattgtgcaatcagactatcaaccacgacgtccccatgataaaacagctcagctacaactgtatcagagtcttattgtactctatg 18265465  T
Q  610 atctgttctggaaataca-cttcaaagtatggtgctaagaccattctaatattgcattgata 670  Q
    ||||||| | |||||||| |||| || |||||||||||||||| || ||||| | |||||||    
T  18265464 atctgttatagaaatacaccttccaa-tatggtgctaagaccaatccaatatggtattgata 18265404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 411 - 670
Target Start/End: Complemental strand, 1286422 - 1286165
Alignment:
Q  411 tgttggaacaatagtcaaaattagttaaaaaatatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttca 510  Q
    |||||||||||| |||||||||||||||||| |||||  |||||||| ||||||||||||||||||||||| | ||   ||||||||||||||| |||      
T  1286422 tgttggaacaattgtcaaaattagttaaaaa-tattttctgtcaccggagagattactaggctgagtcgcggactatgccgctctctttaagacatttg- 1286325  T
Q  511 tgacacttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactatagga 610  Q
    || || |    |||||||| |||  ||| |||||||||||||||| ||| ||||||||| | |||| |||||| |||||||||| |||||||||||||||    
T  1286324 tggcattgccgaaaattgtgcaactagattattaaccacgacgtctccatgataaaacaactcagctacaactctatcagagtcctattgcactatagga 1286225  T
Q  611 tctgttctggaaatacac-ttcaaagtatggtgctaagaccattctaatattgcattgata 670  Q
    |||||||| ||||||||| |||||| |||||||||||||||| || ||||| | |||||||    
T  1286224 tctgttctagaaatacacattcaaa-tatggtgctaagaccactccaatatggtattgata 1286165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 491 - 569
Target Start/End: Complemental strand, 41587239 - 41587160
Alignment:
Q  491 gctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||| ||||||| ||||||||||| |||| |||||||| ||||||| || | |||||||||||||    
T  41587239 gctctctttaagacgtttcgtgacactgttcaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaaca 41587160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 451 - 594
Target Start/End: Complemental strand, 25215344 - 25215203
Alignment:
Q  451 gtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttcatgacacttttcaaaattgttcaagcagactattaaccacg 550  Q
    |||||||||||||||| | |||||||||||  | ||| |||||||||||||||| ||| |||||| |    |||||||| |||| | ||||| ||||| |    
T  25215344 gtcaccgaagagattatttggctgagtcgcagactaggtcgctctctttaagacattttatgacattgcctaaaattgtgcaagtatactatcaaccatg 25215245  T
Q  551 acgtccccaggataaaacagcccagcaacaactatatcagagtc 594  Q
    |||  || |||||||||||  ||||  |||||||||||||||||    
T  25215244 acg--cctaggataaaacaaaccaggtacaactatatcagagtc 25215203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 451 - 594
Target Start/End: Complemental strand, 25279495 - 25279354
Alignment:
Q  451 gtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttcatgacacttttcaaaattgttcaagcagactattaaccacg 550  Q
    |||||||||||||||| | |||||||||||  | ||| |||||||||||||||| ||| |||||| |    |||||||| |||| | ||||| ||||| |    
T  25279495 gtcaccgaagagattatttggctgagtcgcagactaggtcgctctctttaagacattttatgacattgcctaaaattgtgcaagtatactatcaaccatg 25279396  T
Q  551 acgtccccaggataaaacagcccagcaacaactatatcagagtc 594  Q
    |||  || |||||||||||  ||||  |||||||||||||||||    
T  25279395 acg--cctaggataaaacaaaccaggtacaactatatcagagtc 25279354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 489 - 583
Target Start/End: Complemental strand, 36937592 - 36937496
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaac-agcccagcaacaact 583  Q
    |||||||||||||||||||||||| ||||   ||||||||| ||| ||||||||| ||||||| || | |||||||||||| |||||||| ||||||    
T  36937592 tcgctctctttaagacgtttcatggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaacaagcccagctacaact 36937496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 489 - 583
Target Start/End: Complemental strand, 36942346 - 36942250
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaac-agcccagcaacaact 583  Q
    |||||||||||||||||||||||| ||||   ||||||||| ||| ||||||||| ||||||| || | |||||||||||| |||||||| ||||||    
T  36942346 tcgctctctttaagacgtttcatggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaacaagcccagctacaact 36942250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 464 - 583
Target Start/End: Complemental strand, 6155524 - 6155404
Alignment:
Q  464 ttactaggctgagtcgcgtattagttcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccagga 562  Q
    |||||||| |||||| || || || ||||||||||||||||||||| || |||| | ||||||| | |||| |||||||| ||||||  || | ||||||    
T  6155524 ttactaggttgagtcacg-atcaggtcgctctctttaagacgtttcgtggcactgtccaaaattttacaagacagactatcaaccacaccgcctccagga 6155426  T
Q  563 taaaac-agcccagcaacaact 583  Q
    |||||| |||||||| ||||||    
T  6155425 taaaacaagcccagctacaact 6155404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 569
Target Start/End: Original strand, 7451772 - 7451853
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || |||| | ||||||||| ||| ||||||||| |||||||  | | |||||||||||||    
T  7451772 tcgctctctttaagacgtttcgtggcactgtccaaaattgtgcaaggcagactatcaaccacgctgcctccaggataaaaca 7451853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 569
Target Start/End: Original strand, 12103039 - 12103120
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || ||||   ||||||||| ||| ||||||||| ||||||| || | |||||||||||||    
T  12103039 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 12103120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 569
Target Start/End: Original strand, 26667286 - 26667367
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || ||||   ||||||||| ||| ||||||||| ||||||| || | |||||||||||||    
T  26667286 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 26667367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 569
Target Start/End: Original strand, 26938883 - 26938964
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || ||||   ||||||||| ||| ||||||||| ||||||| || | |||||||||||||    
T  26938883 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 26938964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 29168054 - 29167973
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || ||||   ||||||||| ||| ||||||||| ||||||| || | |||||||||||||    
T  29168054 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 29167973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 35679956 - 35679875
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || |||| |  |||||||| ||| ||||||||| ||||||| || | |||||||||||||    
T  35679956 tcgctctctttaagacgtttcgtggcactgtcaaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 35679875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 37652911 - 37652830
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| ||||| | | ||||||||| ||| ||||||||| ||||||| |  | |||||||||||||    
T  37652911 tcgctctctttaagacgtttcgtgacattgtccaaaattgtgcaaggcagactatcaaccacgccacctccaggataaaaca 37652830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 489 - 583
Target Start/End: Complemental strand, 12501980 - 12501884
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttc-aagcagactattaaccacgacgtccccaggataaaac-agcccagcaacaact 583  Q
    ||||||||||||||||||||| || ||||   ||||||||| | || |||||||| ||||||| || | |||||||||||| |||||||| ||||||    
T  12501980 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaaacagactatcaaccacgccgcctccaggataaaacaagcccagctacaact 12501884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 489 - 583
Target Start/End: Original strand, 42001448 - 42001544
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaac-agcccagcaacaact 583  Q
    ||||||||||||||||||||| || ||||   |||||||||  ||| |||||||| ||||||| || | |||||||||||| |||||||| ||||||    
T  42001448 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgtaagacagactatcaaccacgccgcctccaggataaaacaagcccagctacaact 42001544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 569
Target Start/End: Original strand, 556709 - 556790
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||  || ||||   ||||||||| ||| ||||||||| ||||||| || | |||||||||||||    
T  556709 tcgctctctttaagacgttttgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 556790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 569
Target Start/End: Original strand, 561481 - 561562
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||  || ||||   ||||||||| ||| ||||||||| ||||||| || | |||||||||||||    
T  561481 tcgctctctttaagacgttttgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 561562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 569
Target Start/End: Complemental strand, 32461630 - 32461549
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||  || ||||   ||||||||| |||| |||||||| ||||||| || | |||||||||||||    
T  32461630 tcgctctctttaagacgttttgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaaca 32461549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 569
Target Start/End: Original strand, 39523063 - 39523144
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || |||    ||||||||| |||| |||||||| ||||||| || | |||||||||||||    
T  39523063 tcgctctctttaagacgtttcgtggcaccgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataaaaca 39523144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 98; Significance: 7e-48; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 416 - 628
Target Start/End: Complemental strand, 171869 - 171657
Alignment:
Q  416 gaacaatagtcaaaattagttaaaaa-atatttcttgtcaccgaagagattactaggctgagtcgcgtattagttcgctctctttaagacgtttcatgac 514  Q
    |||||||||||||||||||||||||| || |||  | ||| |||||||||||||||||||||||||  | ||| ||||||||||||||||||||| || |    
T  171869 gaacaatagtcaaaattagttaaaaatattttttctctcatcgaagagattactaggctgagtcgcagactaggtcgctctctttaagacgtttcgtggc 171770  T
Q  515 acttttcaaaattgttcaagcagactattaaccacgacgtccccaggataaaacagcccagcaacaactatatcagagtcttattgcactataggatctg 614  Q
    |||    |||||||| |||||||||||| |||||||||||||  |||||||||||||||| | |||||| ||| ||| || |||||||||||||||||||    
T  171769 actgcctaaaattgtgcaagcagactatcaaccacgacgtcct-aggataaaacagcccaactacaactgtataagaatcctattgcactataggatctg 171671  T
Q  615 ttctggaaatacac 628  Q
    |||| |||||||||    
T  171670 ttctagaaatacac 171657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 489 - 583
Target Start/End: Complemental strand, 9968 - 9872
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaac-agcccagcaacaact 583  Q
    ||||||||||||||||||||| || ||||   ||||||||| ||| ||||||||| ||||||| || | |||||||||||| |||||||| ||||||    
T  9968 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaacaagcccagctacaact 9872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 569
Target Start/End: Original strand, 35649 - 35729
Alignment:
Q  490 cgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaaca 569  Q
    |||||||||||||||||||| |||||||   ||||||||| ||| ||||||||| ||||||| || | |||||||||||||    
T  35649 cgctctctttaagacgtttcgtgacactggccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 35729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 569
Target Start/End: Original strand, 7118 - 7199
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaa-gcagactattaaccacgacgtccccaggataaaaca 569  Q
    ||||||||||||||||||||| || ||||   ||||||||| ||| ||||||||| ||||||| || | |||||||||||||    
T  7118 tcgctctctttaagacgtttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaaca 7199  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 489 - 583
Target Start/End: Original strand, 4088 - 4184
Alignment:
Q  489 tcgctctctttaagacgtttcatgacacttttcaaaattgttcaag-cagactattaaccacgacgtccccaggataaaac-agcccagcaacaact 583  Q
    |||||||||||||||| |||| || ||||   ||||||||| |||| |||||||| ||||||| || | |||||||||||| |||||||| ||||||    
T  4088 tcgctctctttaagacatttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataaaacaagcccagctacaact 4184  T

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