View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0962_low_31 (Length: 391)
Name: NF0962_low_31
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 132 - 381
Target Start/End: Complemental strand, 37791029 - 37790779
Alignment:
| Q |
132 |
cttattaaaccgacctttcttttctgaatgcccattgttgatgattgattaggaattgagtttcattatagannnnnnn-gaagaataatgttagatatt |
230 |
Q |
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| T |
37791029 |
cttattaaaccgacctttcttttctgaatgcccattgttgatgattgattaggaattgagtttcattatagattttttttgaagaataatgttagatatt |
37790930 |
T |
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| Q |
231 |
ttgctatattcaaacataactttgccagaatataatcatattttcactttatgtaaaccatgtaccattctttaggatatttcacagctgtcatgtttga |
330 |
Q |
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| T |
37790929 |
ttgctatattcaaacataactttgccagaatataatcatattttcactttatgtaaaccatgtaccattctttaggatatttcacagctgtcatgtttga |
37790830 |
T |
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| Q |
331 |
atttacactcgatgttctcgttactgttgcatcatacaccatttacctttg |
381 |
Q |
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| T |
37790829 |
atttacactcgatgttctcgttactgttgcatcatacaccatttacctttg |
37790779 |
T |
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