View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0962_low_36 (Length: 381)
Name: NF0962_low_36
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 353
Target Start/End: Original strand, 3982202 - 3982539
Alignment:
| Q |
16 |
ataaccaacgctcttataagtagtatcactgaaggtggcgcgaaaatcaaaatgtggtgaaaattgaaagcacacaacaatggaagacgacggtggagaa |
115 |
Q |
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| T |
3982202 |
ataaccaacgctcttataagtagtatcactgaaggtggcgcgaaaatcaaaatgtggtgaaaattgaaagcacacaacaatggaaaacgacggtggagaa |
3982301 |
T |
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| Q |
116 |
ggttcaagcttccttgtcagcatcattgaaaacagagctaaagaggtttcaatcttcaatactcagttcaattagttttcatgcaataatggaatcataa |
215 |
Q |
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| T |
3982302 |
ggttcaagcttccttgtcagcatcattgaaaacagagctaaggaggtttcaatcttcaatactcagttcaattagttttcatgcaataatggaatcataa |
3982401 |
T |
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| Q |
216 |
tcttctcgttctctttttcaatttacttcatcgtttgcttttcagatcaatttgattcttgtagttgattttgatcgaaatgaaattaacacaaattcca |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3982402 |
tcttctcgttctctttttcaatttacttcatcgtttgcttttcagatcaatttgattcttgtagttgattttgatcgaaatgaaattcacacaaattcca |
3982501 |
T |
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| Q |
316 |
ggattaaactgtgcttttaattattcttatcaattcat |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
3982502 |
ggattaaactgtgcttttaattattcttatcaattcat |
3982539 |
T |
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