View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0962_low_40 (Length: 364)

Name: NF0962_low_40
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0962_low_40
NF0962_low_40
[»] chr3 (4 HSPs)
chr3 (80-240)||(34811102-34811260)
chr3 (173-240)||(3608333-3608400)
chr3 (83-139)||(3608399-3608453)
chr3 (308-355)||(33511361-33511407)
[»] chr5 (3 HSPs)
chr5 (308-355)||(36230340-36230387)
chr5 (321-355)||(31646322-31646356)
chr5 (37-77)||(31646363-31646403)
[»] chr7 (1 HSPs)
chr7 (308-355)||(40954083-40954130)
[»] chr4 (2 HSPs)
chr4 (308-344)||(46695768-46695804)
chr4 (308-355)||(22487745-22487792)
[»] chr6 (1 HSPs)
chr6 (317-351)||(12588030-12588064)


Alignment Details
Target: chr3 (Bit Score: 106; Significance: 6e-53; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 80 - 240
Target Start/End: Original strand, 34811102 - 34811260
Alignment:
Q  80 taagtatgtgtttgcttccgcgtttgaccccttctctctctccacatttagagcacttttttgttgtggttttgagaaactataaattgtagcttatgtg 179  Q
    |||||||||||||||||| | |||||||||||||| ||||  |||||||| ||| ||||||| ||||||||||||||| ||| |||||||||||||||||    
T  34811102 taagtatgtgtttgcttcagtgtttgaccccttctttctc--cacatttaaagcgcttttttattgtggttttgagaagctacaaattgtagcttatgtg 34811199  T
Q  180 caaacgtgactttatgccttgcttttgccaagacgtgaaaattgtaccgctccaccaaaca 240  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||    
T  34811200 caaacgtgactttatgccttgcttttgccaagacgtggaaattgcaccgctccatcaaaca 34811260  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 3608400 - 3608333
Alignment:
Q  173 ttatgtgcaaacgtgactttatgccttgcttttgccaagacgtgaaaattgtaccgctccaccaaaca 240  Q
    |||||||||||  ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  3608400 ttatgtgcaaatatgactttatgccttgcttttgccaagatgtggaaattgtaccgctccaccaaaca 3608333  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 3608453 - 3608399
Alignment:
Q  83 gtatgtgtttgcttccgcgtttgaccccttctctctctccacatttagagcactttt 139  Q
    |||||||||| |||| |||||||||||||||||  ||||||| ||||||||||||||    
T  3608453 gtatgtgtttacttcagcgtttgaccccttctc--tctccacgtttagagcactttt 3608399  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 33511361 - 33511407
Alignment:
Q  308 ttgtgcctacacaaaatattttaaatttttatttttaagtagtataat 355  Q
    |||| ||||||||||||||||| |||||||||||||||||| ||||||    
T  33511361 ttgtccctacacaaaatatttt-aatttttatttttaagtaatataat 33511407  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 36230340 - 36230387
Alignment:
Q  308 ttgtgcctacacaaaatattttaaatttttatttttaagtagtataat 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36230340 ttgtgcctacacaaaatattttaaatttttatttttaagtagtataat 36230387  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 321 - 355
Target Start/End: Complemental strand, 31646356 - 31646322
Alignment:
Q  321 aaatattttaaatttttatttttaagtagtataat 355  Q
    |||||||||||||||||||||||||||||||||||    
T  31646356 aaatattttaaatttttatttttaagtagtataat 31646322  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 31646403 - 31646363
Alignment:
Q  37 tctatagtaaagagacaacattcaatgtttattactcgaaa 77  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  31646403 tctaaagtaaagagacagcattcaatgtttattactcgaaa 31646363  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 40954083 - 40954130
Alignment:
Q  308 ttgtgcctacacaaaatattttaaatttttatttttaagtagtataat 355  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  40954083 ttgtgcctacacaaaatattttaaatttttatttttaagtagaataat 40954130  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 308 - 344
Target Start/End: Original strand, 46695768 - 46695804
Alignment:
Q  308 ttgtgcctacacaaaatattttaaatttttattttta 344  Q
    |||||||||||||||||||||||||||||||||||||    
T  46695768 ttgtgcctacacaaaatattttaaatttttattttta 46695804  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 308 - 355
Target Start/End: Complemental strand, 22487792 - 22487745
Alignment:
Q  308 ttgtgcctacacaaaatattttaaatttttatttttaagtagtataat 355  Q
    ||||||| ||||||||||||||| ||||||||||| ||||||||||||    
T  22487792 ttgtgcccacacaaaatattttacatttttattttgaagtagtataat 22487745  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 351
Target Start/End: Complemental strand, 12588064 - 12588030
Alignment:
Q  317 cacaaaatattttaaatttttatttttaagtagta 351  Q
    ||||||||||||||||||||||||||||| |||||    
T  12588064 cacaaaatattttaaatttttatttttaattagta 12588030  T

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