View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0962_low_41 (Length: 361)
Name: NF0962_low_41
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 96 - 356
Target Start/End: Original strand, 506400 - 506655
Alignment:
| Q |
96 |
ctattattgctactgaatcagttcatatctttatttgacacagcagagcaggatctaaacttctgattagggaacttccatccatatttgatggatcagc |
195 |
Q |
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| T |
506400 |
ctattattgctactgaatcagttcatatctttatttgacacagca-----ggatctaaacttctgatcagggaacttccatccatatttgatggatcagc |
506494 |
T |
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| Q |
196 |
aagagtgaaggcacatcagaatataaggctacattggcaccaaaggtagtgttggttttgattatattactcagaagggaagaagaaatgattttcctat |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
506495 |
aagagtgaaggcacatcagaatataaggctacattggcaccaaaggtagtgttggttttgattatattactcagaagggaagaagaaatgattttcctat |
506594 |
T |
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| Q |
296 |
cgatattgttagttcaaaacatatatcagatcctccattgcttttgccgccctatgctact |
356 |
Q |
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| T |
506595 |
cgatattgttagttcaaaacatatatcagatcctccattgcttttgctgcccaatgttact |
506655 |
T |
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Target: chr6 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 110 - 302
Target Start/End: Original strand, 47449 - 47643
Alignment:
| Q |
110 |
gaatcagttcatatctttatttgacacagcagagcaggatctaaacttctgattagggaacttccatccatatttgatggatcagcaagagtgaaggcac |
209 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| |||| |
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| T |
47449 |
gaatcagttcatatctttatttgacaaagcag-----gatctaaacttctgattagggaacttccatccatttttgatggatcagctagagcgaacgcac |
47543 |
T |
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| Q |
210 |
atc----agaatat---aaggctacattggcaccaaaggtagtgttggttttgattatattactcagaagggaagaagaaatgattttcctatcgatatt |
302 |
Q |
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| T |
47544 |
aaccccaagatgattcaaaggctacattggcaccaaaggtagtgttggttttgattatgttactcagaagggaagaagaaatgattttcctattgatatt |
47643 |
T |
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