View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0962_low_42 (Length: 360)
Name: NF0962_low_42
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_low_42 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 29 - 348
Target Start/End: Original strand, 13373220 - 13373539
Alignment:
| Q |
29 |
agatattacgcttatcttgatgttataagaaactacacaggccaatatttccattgattatacatacaagagtgtttggatgatacggtaagatatacat |
128 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13373220 |
agatattatgcttatcttgatgttataagaaactacacaggccaatatttccattgattatacatacaagagtgtttggatgatacggtaagatatacat |
13373319 |
T |
|
| Q |
129 |
ttcaacttatctggatgtcctaagtttgaatccagttatgaatctaaaacatatttaatctgaagttcggttgaaagataagtaaagattaaccatgaat |
228 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||| |
|
|
| T |
13373320 |
ttcaatttatctggatgtcttaagtttgaatcctgttatgagtctaaaacatatttaatctgaagtttggttgaaaaataagtaaagtttaaccatgaat |
13373419 |
T |
|
| Q |
229 |
tatttcacccatgaatcaaattcaggttcttctgaattattcgtcatttgatggaacgcattgaccacttaaacccaatcatttggcttctcccggatat |
328 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
13373420 |
tatttcacccatgaattaaatttaggttctcctgaatcattcgtcatttgatggagcgcattgaccacttaaacccaatcatttggcttctaccaaatat |
13373519 |
T |
|
| Q |
329 |
ttatttattactttgatatt |
348 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
13373520 |
ttatttattactttgatatt |
13373539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 39742968 - 39743016
Alignment:
| Q |
230 |
atttcacccatgaatcaaattcaggttcttctgaattattcgtcatttg |
278 |
Q |
| |
|
|||||||||| |||||||| ||||||||| |||||| |||||||||||| |
|
|
| T |
39742968 |
atttcacccaggaatcaaactcaggttctcctgaataattcgtcatttg |
39743016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University