View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0962_low_44 (Length: 358)

Name: NF0962_low_44
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0962_low_44
NF0962_low_44
[»] chr8 (10 HSPs)
chr8 (28-349)||(4505967-4506288)
chr8 (196-348)||(15077115-15077267)
chr8 (214-348)||(15164894-15165028)
chr8 (192-300)||(13033891-13033999)
chr8 (199-349)||(15751590-15751740)
chr8 (198-286)||(15000653-15000741)
chr8 (192-292)||(15030197-15030297)
chr8 (192-292)||(15053025-15053125)
chr8 (67-116)||(15077319-15077368)
chr8 (67-116)||(15164775-15164824)
[»] chr7 (3 HSPs)
chr7 (192-301)||(1617755-1617864)
chr7 (192-293)||(1626305-1626406)
chr7 (192-247)||(1631266-1631321)
[»] chr3 (1 HSPs)
chr3 (192-306)||(3652462-3652576)


Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 28 - 349
Target Start/End: Original strand, 4505967 - 4506288
Alignment:
Q  28 caattgagacaacatcatatggtgtactaaacatgtagcacctctttattcagcacaagaaaagaaaaaacatttgtgccatgcatgtttcttacatgta 127  Q
    |||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4505967 caattgagacaaccacatatggtgtactaaacatgtagtacctctttattcagcacaagagaagaaaaaacatttgtgccatgcatgtttcttacatgta 4506066  T
Q  128 gtaataaaacatccactgaccatttgacaatagtgtgaaaggatcactttatgttgttgataggtccacttaacttttcttctatgattttggatagttt 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4506067 gtaataaaacatccactgaccatttgacaatagtgtgaaaggatcgctttatgttgttgataggtccacttaacttttcttctatgattttggatagttt 4506166  T
Q  228 ttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaacttgttctcaaagttcagtccaacagatccagattta 327  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4506167 ttcttccattcaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaacttgttctcaaagtttagtccaacagatccagattta 4506266  T
Q  328 tttacctccaattccttcatct 349  Q
    ||||||||||||||||||||||    
T  4506267 tttacctccaattccttcatct 4506288  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 196 - 348
Target Start/End: Complemental strand, 15077267 - 15077115
Alignment:
Q  196 cttaacttttcttctatgattttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaacttgt 295  Q
    ||||||||||| || |  |||||||| |||||||||||||||||||| ||||| |||||| |||||||| ||||||  ||||||| ||||||||| ||||    
T  15077267 cttaacttttcatccacaattttggacagtttttcttccattgaaggggaaaggtaatttttccaatcttctactttggcctttcgaaagaagaatttgt 15077168  T
Q  296 tctcaaagttcagtcc-aacagatccagatttatttacctccaattccttcatc 348  Q
    |||||| | || | || |||||||||| ||||||||||||||||||||||||||    
T  15077167 tctcaatg-tctgaccgaacagatccaaatttatttacctccaattccttcatc 15077115  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 214 - 348
Target Start/End: Original strand, 15164894 - 15165028
Alignment:
Q  214 attttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaacttgttctcaaagt-tcagtcca 312  Q
    ||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||  ||||||| ||||||||| |||||| |||  | | |   ||    
T  15164894 attttggatagtttttcttccattgaaggggaaaggtaatttttccaatctcctactttggcctttcgaaagaagaatttgttcccaacatatgaccgca 15164993  T
Q  313 acagatccagatttatttacctccaattccttcatc 348  Q
      | ||||||||||||||||||||||||||||||||    
T  15164994 tga-atccagatttatttacctccaattccttcatc 15165028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 300
Target Start/End: Complemental strand, 13033999 - 13033891
Alignment:
Q  192 tccacttaacttttcttctatgattttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaac 291  Q
    ||||||||| ||||||||||||| |||||||| | |||||  ||||||||||||||  ||||||| ||||||||||| |||| |||||| |||||| |||    
T  13033999 tccacttaatttttcttctatgactttggataatctttctatcattgaaggagaaaagtaatttacccaatctcctatttctccctttcgaaagaaaaac 13033900  T
Q  292 ttgttctca 300  Q
    || ||||||    
T  13033899 tttttctca 13033891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 199 - 349
Target Start/End: Complemental strand, 15751740 - 15751590
Alignment:
Q  199 aacttttcttctatgattttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaacttgttct 298  Q
    ||||| ||||| ||||||||||||||||||||| |||||||||||||||| || || |||||||||||||| || |||||||  || ||| | || || |    
T  15751740 aacttctcttcaatgattttggatagtttttctaccattgaaggagaaaggtagttaatccaatctcctacctcagcctttcggaacaagtagttttttt 15751641  T
Q  299 caaagttcagtccaacagatccagatttatttacctccaattccttcatct 349  Q
    |||  |||  |||||    |||| |||||||| ||||||||||||||||||    
T  15751640 caattttccttccaaactctccaaatttatttgcctccaattccttcatct 15751590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 286
Target Start/End: Complemental strand, 15000741 - 15000653
Alignment:
Q  198 taacttttcttctatgattttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaaga 286  Q
    |||| |||||| | |||||||||||| ||||||| |||||||| | |||||||||||| |||||||||||| ||| ||||||| |||||    
T  15000741 taacatttcttttgtgattttggatattttttctaccattgaacgggaaagataatttttccaatctcctatttcggcctttcgaaaga 15000653  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 292
Target Start/End: Complemental strand, 15030297 - 15030197
Alignment:
Q  192 tccacttaacttttcttctatgattttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaac 291  Q
    ||||||||| ||||||| ||||| |||||||| |||||||  ||||||||| || |||||||| | |||||| || |  ||| ||||||||||||| |||    
T  15030297 tccacttaatttttcttttatgactttggataatttttctatcattgaaggggagagataattcacccaatcccccatctctccctttctaaagaaaaac 15030198  T
Q  292 t 292  Q
    |    
T  15030197 t 15030197  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 292
Target Start/End: Complemental strand, 15053125 - 15053025
Alignment:
Q  192 tccacttaacttttcttctatgattttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaac 291  Q
    |||||| || |||||||  ||||||||||||| | |||||  ||||||||||||||  ||||||| |||||| |||| |||| |||||| |||||| |||    
T  15053125 tccactgaatttttcttgcatgattttggataatctttctatcattgaaggagaaaagtaatttacccaatcccctatttctccctttcgaaagaaaaac 15053026  T
Q  292 t 292  Q
    |    
T  15053025 t 15053025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 15077368 - 15077319
Alignment:
Q  67 acctctttattcagcacaagaaaagaaaaaacatttgtgccatgcatgtt 116  Q
    |||||||||||| ||| ||||||| ||| |||||||||||||||||||||    
T  15077368 acctctttattctgcaaaagaaaataaacaacatttgtgccatgcatgtt 15077319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 15164775 - 15164824
Alignment:
Q  67 acctctttattcagcacaagaaaagaaaaaacatttgtgccatgcatgtt 116  Q
    |||||||||||| ||| ||||||||||  |||||||||||||||||||||    
T  15164775 acctctttattctgcaaaagaaaagaaccaacatttgtgccatgcatgtt 15164824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 192 - 301
Target Start/End: Original strand, 1617755 - 1617864
Alignment:
Q  192 tccacttaacttttcttctatgattttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaac 291  Q
    ||||||||| |||||||||||||||||||| || || ||| |||||||||||||||||||||| |||||||| |||| ||||||||||| |||| || ||    
T  1617755 tccacttaatttttcttctatgattttggacagcttctctaccattgaaggagaaagataattaatccaatcccctatttctgcctttcgaaagtagtac 1617854  T
Q  292 ttgttctcaa 301  Q
    || |||||||    
T  1617855 tttttctcaa 1617864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 192 - 293
Target Start/End: Original strand, 1626305 - 1626406
Alignment:
Q  192 tccacttaacttttcttctatgattttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaac 291  Q
    ||||||||| ||||||||||||||||||||||  || ||| |||||||||||||||||||||| |||||||| |||| |||| |||||| ||||||| ||    
T  1626305 tccacttaatttttcttctatgattttggataacttatctaccattgaaggagaaagataattaatccaatcccctatttctccctttcgaaagaagtac 1626404  T
Q  292 tt 293  Q
    ||    
T  1626405 tt 1626406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 1631266 - 1631321
Alignment:
Q  192 tccacttaacttttcttctatgattttggatagtttttcttccattgaaggagaaa 247  Q
    ||||||||| ||||||||||||||||||||||  |||||| ||||||||| |||||    
T  1631266 tccacttaatttttcttctatgattttggataacttttctaccattgaagaagaaa 1631321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 306
Target Start/End: Original strand, 3652462 - 3652576
Alignment:
Q  192 tccacttaacttttcttctatgattttggatagtttttcttccattgaaggagaaagataatttatccaatctcctacttctgcctttctaaagaagaac 291  Q
    ||||| |||||| ||||| ||||  ||||| | ||||||  |||||||||| |||||||||||  ||||||| || |||||  | |||||||| ||||||    
T  3652462 tccacctaacttctcttcaatgaccttggacaatttttcaaccattgaaggtgaaagataattactccaatcaccaacttcaccttttctaaacaagaac 3652561  T
Q  292 ttgttctcaaagttc 306  Q
    || ||||||||||||    
T  3652562 ttattctcaaagttc 3652576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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