View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0962_low_5 (Length: 694)
Name: NF0962_low_5
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_low_5 |
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| [»] scaffold0753 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 2e-82; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 260 - 427
Target Start/End: Complemental strand, 9125795 - 9125628
Alignment:
| Q |
260 |
taaagtattccgcgacaacatatcctttcggagacatccgataaaattgaaaagacacggggaagtattatgtgaatatatacataatatatatggattg |
359 |
Q |
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| T |
9125795 |
taaagtattccgcgacaacatatcctttcggagacatccaataaaattgaaaagacacggggaagtattatgtgaatatatacataatatatatggattg |
9125696 |
T |
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| Q |
360 |
attactaaatgtatagagcaaggtcaagtgcttgggggacctttcaaatatatatggatttatgattt |
427 |
Q |
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| T |
9125695 |
attaccaaatgtatagagcaaggtcaagtgcttgggggacctttcaaatatatatgtatttatgattt |
9125628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 507 - 680
Target Start/End: Complemental strand, 9125152 - 9124979
Alignment:
| Q |
507 |
taactgaattttgttggttaatcaggttacatttgtttcctagtcctaccttcactgacaaaatgtgaaaattgttatcctggacatcgtgatcgggtac |
606 |
Q |
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| T |
9125152 |
taactgaattttgttggttaatcaggttatatttgtttcctaatcctaccttcactgacaaaatgtgaaaattgttatgctggacatcgtgatcgggtac |
9125053 |
T |
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| Q |
607 |
aaacccgactcctccatttatgtatgtgagatttcaatagtcgttgtaagttcatctttccaacggtctttata |
680 |
Q |
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| T |
9125052 |
aaacccggctcctccatttatgtatgtgagatttcaatattcgttgcaagttcatctttccaatggtctttata |
9124979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 462 - 510
Target Start/End: Complemental strand, 9125561 - 9125513
Alignment:
| Q |
462 |
gaggtattgttgatccaggtctgttgttcagttctcagattgtaataac |
510 |
Q |
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| T |
9125561 |
gaggtattgttgatccaggtctgttgttcagttctcagattgtaataac |
9125513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 258
Target Start/End: Complemental strand, 9134075 - 9133997
Alignment:
| Q |
180 |
cttattgactgtatgtggcatatttacattttcactttgcagttacaatgctaccccaaaaagaggcaccttctgacat |
258 |
Q |
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| T |
9134075 |
cttattgaatgtttgtgacatatttacattttcacattgtagttacaatgcaagcccaagaggaggcacctcctgacat |
9133997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 9300539 - 9300599
Alignment:
| Q |
198 |
catatttacattttcactttgcagttacaatgctaccccaaaaagaggcaccttctgacat |
258 |
Q |
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| T |
9300539 |
catatttacattttcactttgcagttacaatgcaaggctaaaaggaggcacctcctgacat |
9300599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 204 - 258
Target Start/End: Complemental strand, 9309153 - 9309099
Alignment:
| Q |
204 |
tacattttcactttgcagttacaatgctaccccaaaaagaggcaccttctgacat |
258 |
Q |
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| T |
9309153 |
tacattttcactttgtagttacaatgcaaggccaaaaggaggcacctcctgacat |
9309099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 198 - 230
Target Start/End: Original strand, 9156199 - 9156231
Alignment:
| Q |
198 |
catatttacattttcactttgcagttacaatgc |
230 |
Q |
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| T |
9156199 |
catatttacattttcactttgtagttacaatgc |
9156231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0753 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0753
Description:
Target: scaffold0753; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 5911 - 5970
Alignment:
| Q |
184 |
ttgactgtatgtggcatatttacattttcactttgcagttacaatgctaccccaaaaaga |
243 |
Q |
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| T |
5911 |
ttgactgtttgtgtcatatttacattttcacattgcagttacaatgctaggccaaaaaga |
5970 |
T |
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