View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0962_low_50 (Length: 333)
Name: NF0962_low_50
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 34819871 - 34820174
Alignment:
| Q |
1 |
tcttccctttcttctttaaaggacatgcctcagcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatact |
100 |
Q |
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| T |
34819871 |
tcttccctttcttctttaaaggacatgcctcaacgagttgatggtcaatcttagcttgcaaaaccaccgcatacgtaccatcatcatttttggtgatact |
34819970 |
T |
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| Q |
101 |
ctcgtcaataaaacttccagcaaagatttctgattcagacttagatcttcttattgcttttgcactaaacacatttattctcgttcctttatgttcttgg |
200 |
Q |
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| T |
34819971 |
ctcgtcaacaaaactcccagccaagatttctgattcagacttggatcttctaattgcttttgcactaaacacatttagtctcattcctttatgttcttgg |
34820070 |
T |
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| Q |
201 |
cagctaactcttttctcaactggtggctttgtacaaatactatcatcattcttcttgtttgtctcgcctttatcactcttccctttcttctttaaaggag |
300 |
Q |
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| T |
34820071 |
cagctaactcttttctcagctggtggctttgtacaaatactaccatcattcttcttggttgtctcgcctttatcactcttccctttcttctttaaaggag |
34820170 |
T |
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| Q |
301 |
acgc |
304 |
Q |
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|||| |
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| T |
34820171 |
acgc |
34820174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 34820147 - 34820261
Alignment:
| Q |
1 |
tcttccctttcttctttaaaggacatgcctcagcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatact |
100 |
Q |
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| T |
34820147 |
tcttccctttcttctttaaaggagacgcctcagcgagttgatggtcaacctcagcttccaaagtcacctatgacgtaccaacattattttttgtgatgct |
34820246 |
T |
|
| Q |
101 |
ctcgtcaataaaact |
115 |
Q |
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|||||||| |||||| |
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| T |
34820247 |
ctcgtcaacaaaact |
34820261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 247 - 299
Target Start/End: Original strand, 34819841 - 34819893
Alignment:
| Q |
247 |
cattcttcttgtttgtctcgcctttatcactcttccctttcttctttaaagga |
299 |
Q |
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| T |
34819841 |
cattcttcttgttggcctcgcctttatcactcttccctttcttctttaaagga |
34819893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 34820530 - 34820612
Alignment:
| Q |
33 |
gcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact |
115 |
Q |
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| T |
34820530 |
gcgagctgatggtcaagctcaacttccaaaaccacctccgacataccgacatcaattttagtgatactttcgtcaacaaaact |
34820612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 34820296 - 34820377
Alignment:
| Q |
33 |
gcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaac |
114 |
Q |
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| T |
34820296 |
gcgagttgatggtcaaccacaacttccaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaaac |
34820377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 34820653 - 34820729
Alignment:
| Q |
39 |
tgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact |
115 |
Q |
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| T |
34820653 |
tgatggttaacctcagcttccaaagccacctctgacgtaccaatatcattttttgtgatactctcgtcaacaaaact |
34820729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 34835101 - 34835165
Alignment:
| Q |
175 |
ttattctcgttcctttatgttcttggcagctaactcttttctcaactggtggctttgtacaaata |
239 |
Q |
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|||||||| ||||||||||||| || || |||||||||||||| || || | ||||||||||||| |
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| T |
34835101 |
ttattctcattcctttatgttcatgacacctaactcttttctcgaccggcgtctttgtacaaata |
34835165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 34820807 - 34820846
Alignment:
| Q |
76 |
taccaacatcatttttggtgatactctcgtcaataaaact |
115 |
Q |
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| T |
34820807 |
taccaacatcattttttgtgatactctcgtcaacaaaact |
34820846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 34820413 - 34820495
Alignment:
| Q |
33 |
gcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact |
115 |
Q |
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||||| |||||||||| || | ||| |||||||||||| | |||||||||||||||| ||| ||||||||||| |||||| |
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| T |
34820413 |
gcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcgtcaacaaaact |
34820495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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