View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0962_low_54 (Length: 305)
Name: NF0962_low_54
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 3852020 - 3851771
Alignment:
| Q |
1 |
gtaactaaccaactagaagcaatatacttcctttgtcacaagcctaaagatattatcacatacatcaaaattcatattataattcattttatttaagctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3852020 |
gtaactaaccaactagaagcaatatacttcctttgtcacaagcctaaagatattatcacatacatcaaaattcatattataattcattttatttaagctt |
3851921 |
T |
|
| Q |
101 |
gtaaccaaacaagcacttactagatgccttcaaacttgcaatgcaaaaatgtgtgtgttggggatttggttgtggacctgactgaccgaccatcaaacag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3851920 |
gtaaccaaacaagcacttactagatgccttcaaacttgcaatgcaaaaatgtctgtgttggggatttgtttgtggacctgactgaccgaccatcaaacag |
3851821 |
T |
|
| Q |
201 |
ttttttcacgtttgtaaggactgaaatattccaattccatttctgtgctc |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3851820 |
ttttttcacgtttgtaaggactgaaatattccaattccatttatgtgctc |
3851771 |
T |
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