View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0962_low_55 (Length: 296)
Name: NF0962_low_55
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 87 - 272
Target Start/End: Original strand, 40180738 - 40180923
Alignment:
| Q |
87 |
gaataccggtctgatagtggccaatatgcttcagcaagttccacagataaagtatatccttcttctttagtgcaacatcgtattcagtgggagcagtggg |
186 |
Q |
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| T |
40180738 |
gaataccggtctgatagtggccaatatgcttcagcaagttccacagataaagtatatccttcttctttagtgcaacatcgtattcagtgggagcagtggg |
40180837 |
T |
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| Q |
187 |
gcatattgacaatacaagggattccagaacaggggtagtgatgagattcttattattcttccaaaccaactctacaaagcggataa |
272 |
Q |
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| T |
40180838 |
gcatattgacaatacaagggattccagaacaggggtagtgatgagattcttattattcttccaaaccaattctacaaagtggataa |
40180923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 187 - 257
Target Start/End: Complemental strand, 44459420 - 44459350
Alignment:
| Q |
187 |
gcatattgacaatacaagggattccagaacaggggtagtgatgagattcttattattcttccaaaccaact |
257 |
Q |
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| T |
44459420 |
gcatattgatgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaact |
44459350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 187 - 257
Target Start/End: Complemental strand, 44466953 - 44466883
Alignment:
| Q |
187 |
gcatattgacaatacaagggattccagaacaggggtagtgatgagattcttattattcttccaaaccaact |
257 |
Q |
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| T |
44466953 |
gcatattgatgaaacaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaact |
44466883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 44460109 - 44460076
Alignment:
| Q |
200 |
acaagggattccagaacaggggtagtgatgagat |
233 |
Q |
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| T |
44460109 |
acaagggattccagaacaggggtagtgatgagat |
44460076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 44467642 - 44467609
Alignment:
| Q |
200 |
acaagggattccagaacaggggtagtgatgagat |
233 |
Q |
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| T |
44467642 |
acaagggattccagaacaggggtagtgatgagat |
44467609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 44460211 - 44460150
Alignment:
| Q |
95 |
gtctgatagtggccaatatgcttcagcaagttccacagataaagtatatccttcttctttag |
156 |
Q |
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| T |
44460211 |
gtctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgtcgttcttccttag |
44460150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 44467744 - 44467683
Alignment:
| Q |
95 |
gtctgatagtggccaatatgcttcagcaagttccacagataaagtatatccttcttctttag |
156 |
Q |
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| T |
44467744 |
gtctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgtcgttcttccttag |
44467683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 46358978 - 46358921
Alignment:
| Q |
200 |
acaagggattccagaacaggggtagtgatgagattcttattattcttccaaaccaact |
257 |
Q |
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|||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||| |
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| T |
46358978 |
acaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaact |
46358921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 46359081 - 46359020
Alignment:
| Q |
95 |
gtctgatagtggccaatatgcttcagcaagttccacagataaagtatatccttcttctttag |
156 |
Q |
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||||||||||||||||||||||| ||||| | ||||||| ||| ||| || |||||| |||| |
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| T |
46359081 |
gtctgatagtggccaatatgcttaagcaattcccacagaaaaaatatgtcgttcttccttag |
46359020 |
T |
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