View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0962_low_57 (Length: 292)

Name: NF0962_low_57
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0962_low_57
NF0962_low_57
[»] chr5 (3 HSPs)
chr5 (83-226)||(14274740-14274883)
chr5 (95-194)||(39173529-39173628)
chr5 (160-214)||(10813151-10813205)
[»] chr6 (2 HSPs)
chr6 (95-226)||(21729772-21729903)
chr6 (95-226)||(14453346-14453476)
[»] chr3 (5 HSPs)
chr3 (84-218)||(51140100-51140234)
chr3 (83-214)||(40927306-40927437)
chr3 (160-207)||(52964156-52964203)
chr3 (160-207)||(54548333-54548380)
chr3 (160-201)||(38475645-38475686)
[»] chr1 (5 HSPs)
chr1 (95-226)||(14651002-14651130)
chr1 (95-226)||(14660793-14660921)
chr1 (160-207)||(28037673-28037720)
chr1 (160-214)||(33978188-33978242)
chr1 (161-214)||(27643376-27643429)
[»] chr2 (2 HSPs)
chr2 (97-201)||(8323479-8323583)
chr2 (157-214)||(4244400-4244457)
[»] chr4 (2 HSPs)
chr4 (160-213)||(5185486-5185539)
chr4 (160-217)||(38761390-38761447)
[»] scaffold0996 (1 HSPs)
scaffold0996 (160-214)||(1554-1608)
[»] chr8 (2 HSPs)
chr8 (161-214)||(11629521-11629574)
chr8 (161-214)||(16484161-16484214)
[»] chr7 (2 HSPs)
chr7 (162-214)||(513873-513925)
chr7 (160-212)||(27745736-27745788)


Alignment Details
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 83 - 226
Target Start/End: Original strand, 14274740 - 14274883
Alignment:
Q  83 gagtaaaaccaaaattaatacatttcattaataattatagagtacaaatcatgtggtagaatataatagataagagagctaggatgagataaggatgctc 182  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||    
T  14274740 gagtaaaattaaaattaatacatttcattaataattatagagtacaaatcatgtggtacaatataatagatatgagaactaggatgagataaggatgctc 14274839  T
Q  183 tagctatcctatgtgcaaccctatttgcttgcttcccaatgaac 226  Q
    || |||||||||||||||| |||||||||||||| | |||||||    
T  14274840 taactatcctatgtgcaactctatttgcttgctttcgaatgaac 14274883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 194
Target Start/End: Original strand, 39173529 - 39173628
Alignment:
Q  95 aattaatacatttcattaataattatagagtacaaatcatgtggtagaatataatagataagagagctaggatgagataaggatgctctagctatcctat 194  Q
    ||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| ||||| ||  |||||||||||||||||||||| ||||||| ||||    
T  39173529 aattaatgcatttcattaataattatagagtacacatcatgtggaacaatataaaagatatgaaggctaggatgagataaggatgctttagctatgctat 39173628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 10813151 - 10813205
Alignment:
Q  160 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgc 214  Q
    |||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||    
T  10813151 gctaggatgagataaggaagctctagctatactatgagcaaccctattagcttgc 10813205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 95 - 226
Target Start/End: Original strand, 21729772 - 21729903
Alignment:
Q  95 aattaatacatttcattaataattatagagtacaaatcatgtggtagaatataatagataagagagctaggatgagataaggatgctctagctatcctat 194  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| ||||| | | |||||||||||||||||||| | ||||||| ||||    
T  21729772 aattaatgcatttcattaataattatagagtacacatcatgtggtacaatataaaagatatgggggctaggatgagataaggatgttgtagctatgctat 21729871  T
Q  195 gtgcaaccctatttgcttgcttcccaatgaac 226  Q
    |||||||| |||||| |||| ||| |||||||    
T  21729872 gtgcaaccttatttggttgcctccgaatgaac 21729903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 95 - 226
Target Start/End: Original strand, 14453346 - 14453476
Alignment:
Q  95 aattaatacatttcattaataattatagagtacaaatcatgtggtagaatataatagataagagagctaggatgagataaggatgctctagctatcc--- 191  Q
    ||||||||||||||||||||||     ||||||| |||||||| || ||||||| ||||| | | |||||||||||||||||||||||||||||| |       
T  14453346 aattaatacatttcattaataa-----gagtacacatcatgtgttacaatataaaagatatgggggctaggatgagataaggatgctctagctatactat 14453440  T
Q  192 -tatgtgcaaccctatttgcttgcttcccaatgaac 226  Q
     ||||||||||| ||||||||||| ||| |||||||    
T  14453441 atatgtgcaaccttatttgcttgcctccgaatgaac 14453476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 84 - 218
Target Start/End: Original strand, 51140100 - 51140234
Alignment:
Q  84 agtaaaaccaaaattaatacatttcattaataattatagagtacaaatcatgtggtagaatataatagataagagagctaggatgagataaggatgctct 183  Q
    ||||||| || ||||||| |||||||||||||||||||||||||| ||||| || || ||||||| ||||| | | |||||||||  |||||||||||||    
T  51140100 agtaaaagcagaattaatgcatttcattaataattatagagtacagatcatctgatacaatataaaagatatgggggctaggatggcataaggatgctct 51140199  T
Q  184 agctatcctatgtgcaaccctatttgcttgcttcc 218  Q
    |||||| ||||||||||||||||| ||||||||||    
T  51140200 agctatgctatgtgcaaccctattcgcttgcttcc 51140234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 83 - 214
Target Start/End: Original strand, 40927306 - 40927437
Alignment:
Q  83 gagtaaaaccaaaattaatacatttcattaataattatagagtacaaatcatgtggtagaatataatagataagagagctaggatgagataaggatgctc 182  Q
    |||||||| || | ||||| |||||||||||||||||||||||||| ||||| ||||| ||||||| | ||| | | | |||||||| ||||||||||||    
T  40927306 gagtaaaagcatagttaatgcatttcattaataattatagagtacagatcatctggtacaatataaaaaatatgggggataggatgacataaggatgctc 40927405  T
Q  183 tagctatcctatgtgcaaccctatttgcttgc 214  Q
    ||| ||| |||| |||||||||||||||||||    
T  40927406 tagttatgctatatgcaaccctatttgcttgc 40927437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 52964156 - 52964203
Alignment:
Q  160 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatt 207  Q
    |||||||||||||||||| | ||||||||| ||||| |||||||||||    
T  52964156 gctaggatgagataaggaagatctagctatactatgagcaaccctatt 52964203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 54548333 - 54548380
Alignment:
Q  160 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatt 207  Q
    |||||||||||||||||| ||||||||||| ||||| ||||| |||||    
T  54548333 gctaggatgagataaggaagctctagctatactatgagcaactctatt 54548380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 38475686 - 38475645
Alignment:
Q  160 gctaggatgagataaggatgctctagctatcctatgtgcaac 201  Q
    |||||| ||||||||||||||||||| ||| |||||||||||    
T  38475686 gctagggtgagataaggatgctctagttatactatgtgcaac 38475645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 95 - 226
Target Start/End: Complemental strand, 14651130 - 14651002
Alignment:
Q  95 aattaatacatttcattaataattatagagtacaaatcatgtggtagaatataatagataagagagctaggatgagataaggatgctctagctatcctat 194  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| ||||| | | ||||||||||||||   ||||||||||||| ||||    
T  14651130 aattaatgcatttcattaataattatagagtacacatcatgtggtataatataaaagatatgggggctaggatgagata---atgctctagctatgctat 14651034  T
Q  195 gtgcaaccctatttgcttgcttcccaatgaac 226  Q
    |||||||| ||||||||||| ||| |||||||    
T  14651033 gtgcaaccttatttgcttgcctccgaatgaac 14651002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 95 - 226
Target Start/End: Complemental strand, 14660921 - 14660793
Alignment:
Q  95 aattaatacatttcattaataattatagagtacaaatcatgtggtagaatataatagataagagagctaggatgagataaggatgctctagctatcctat 194  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| ||||| | | ||||||||||||||   ||||||||||||| ||||    
T  14660921 aattaatgcatttcattaataattatagagtacacatcatgtggtataatataaaagatatgggggctaggatgagata---atgctctagctatgctat 14660825  T
Q  195 gtgcaaccctatttgcttgcttcccaatgaac 226  Q
    |||||||| ||||||||||| ||| |||||||    
T  14660824 gtgcaaccttatttgcttgcctccgaatgaac 14660793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 28037720 - 28037673
Alignment:
Q  160 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatt 207  Q
    ||||||||||||||| || ||||||||||| ||||| |||||||||||    
T  28037720 gctaggatgagataaagaagctctagctatactatgagcaaccctatt 28037673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 33978188 - 33978242
Alignment:
Q  160 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgc 214  Q
    |||||||||| ||||||| |||||||| || ||||| ||||||||||| ||||||    
T  33978188 gctaggatgacataaggaagctctagcaatactatgagcaaccctattagcttgc 33978242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 27643376 - 27643429
Alignment:
Q  161 ctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgc 214  Q
    ||||| |||||||||||||||||||| || ||||| |||||| |||| ||||||    
T  27643376 ctagggtgagataaggatgctctagcaatactatgagcaaccttattagcttgc 27643429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 201
Target Start/End: Original strand, 8323479 - 8323583
Alignment:
Q  97 ttaatacatttcattaataattatagagtacaaatcatgtggtagaatataatagataagagagctaggatgagataaggatgctctagctatcctatgt 196  Q
    ||||| |||||||||||||||||||| ||||| ||||||||| | | ||||| ||||| | | | |||||||||||||||||||||||| ||| ||||||    
T  8323479 ttaatccatttcattaataattatagcgtacacatcatgtggaacattataaaagatatgggggttaggatgagataaggatgctctagttatgctatgt 8323578  T
Q  197 gcaac 201  Q
    |||||    
T  8323579 gcaac 8323583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 4244457 - 4244400
Alignment:
Q  157 agagctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgc 214  Q
    |||||||||||||||||| |||||||||||||| ||||| ||| | ||||||||||||    
T  4244457 agagctaggatgagataaagatgctctagctatactatgagcagctctatttgcttgc 4244400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 5185486 - 5185539
Alignment:
Q  160 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttg 213  Q
    |||| ||||||||||||| ||||||||||| ||||| ||||||||||| |||||    
T  5185486 gctaagatgagataaggaagctctagctatactatgagcaaccctattagcttg 5185539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 38761390 - 38761447
Alignment:
Q  160 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgcttc 217  Q
    |||||| |||||||||||||||||||| || ||||| |||||| |||| |||||||||    
T  38761390 gctagggtgagataaggatgctctagcaatactatgagcaaccttattagcttgcttc 38761447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0996 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 1554 - 1608
Alignment:
Q  160 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgc 214  Q
    |||||||||| ||||||| |||||||| || ||||| ||||||||||| ||||||    
T  1554 gctaggatgacataaggaagctctagcaatactatgagcaaccctattagcttgc 1608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 11629574 - 11629521
Alignment:
Q  161 ctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgc 214  Q
    ||||| |||||||| ||||||||||| || ||||| ||||| ||||||||||||    
T  11629574 ctagggtgagataatgatgctctagcaatactatgagcaactctatttgcttgc 11629521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 16484161 - 16484214
Alignment:
Q  161 ctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgc 214  Q
    ||||| |||||||||||||||||||| || ||||| |||||| |||| ||||||    
T  16484161 ctagggtgagataaggatgctctagcaatactatgagcaaccttattagcttgc 16484214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 513925 - 513873
Alignment:
Q  162 taggatgagataaggatgctctagctatcctatgtgcaaccctatttgcttgc 214  Q
    |||||||| ||||||| |||||||| || ||||| ||||||||||| ||||||    
T  513925 taggatgacataaggaagctctagcaatactatgagcaaccctattagcttgc 513873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 27745736 - 27745788
Alignment:
Q  160 gctaggatgagataaggatgctctagctatcctatgtgcaaccctatttgctt 212  Q
    |||||| |||||||||||||||||||| || ||||| |||||| |||| ||||    
T  27745736 gctagggtgagataaggatgctctagcgatactatgagcaaccttattagctt 27745788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University