View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0962_low_58 (Length: 288)
Name: NF0962_low_58
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 10 - 277
Target Start/End: Original strand, 40694998 - 40695264
Alignment:
| Q |
10 |
aacaatatggaaacatgacaatttaattatttaatcgtacaaattgggaggactatccatgaaagaaaggccgatccaaggataaggctactaaagctct |
109 |
Q |
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| T |
40694998 |
aacaaaatggaaacatgacaatttaattatttaatcgtacaaattgggaggactatccatgaaagaaaggccgatccaagggtaaggctactaaagctct |
40695097 |
T |
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| Q |
110 |
tgctttaattctaccaacaaaattatttttatcaaattttataaacaaaaagacttcatatgcaaacaaaaaatgcatcatattaaaacttgtttaagac |
209 |
Q |
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| T |
40695098 |
tgctttaattctaccaacaaaattatttttatcaaattttataaacaaaaagacttcatatgcaaacaaaaaatgcatcatattaaaacttgtttaagac |
40695197 |
T |
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| Q |
210 |
ctcatttgtgatnnnnnnnttaacgcacattctttttcatcttattgagtttttcgcacactttatgt |
277 |
Q |
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| T |
40695198 |
ctcatttgtgat-taaaaattaacgcacattctttttcattttattgagtttttcgcacaccttatgt |
40695264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 22066368 - 22066405
Alignment:
| Q |
147 |
tttataaacaaaaagacttcatatgcaaacaaaaaatg |
184 |
Q |
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| T |
22066368 |
tttataaacaaaaaaacttcacatgcaaacaaaaaatg |
22066405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 24578119 - 24578166
Alignment:
| Q |
145 |
attttataaacaaaaagacttcatatgcaaacaaaaaatgcatcatat |
192 |
Q |
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| T |
24578119 |
attttataaacaaaaagacttcatatacaaactaaaaatgcctcatat |
24578166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 2586527 - 2586485
Alignment:
| Q |
140 |
atcaaattttataaacaaaaagacttcatatgcaaacaaaaaa |
182 |
Q |
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| T |
2586527 |
atcaaattttataagcaaaaaggcctcatatgcaaacaaaaaa |
2586485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 42003785 - 42003881
Alignment:
| Q |
86 |
caaggataaggctactaaagctcttgctttaattctaccaacaaaattatttttatcaaattttataaacaaaaagacttcatatgcaaacaaaaaa |
182 |
Q |
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| T |
42003785 |
caagggtaaggctactaaagccgttgctttagttctcccaacaaaaaaataattattatattttataaataaaaatcccacatatgcaaactaaaaa |
42003881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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