View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0962_low_6 (Length: 588)
Name: NF0962_low_6
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 1 - 576
Target Start/End: Complemental strand, 45322291 - 45321716
Alignment:
| Q |
1 |
cagattttgaggtcttttcgggcgcattaaggttcatcggctgctgnnnnnnnaccagccagcagtagtatttcattgattttcctgttgtgctgcgctt |
100 |
Q |
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| T |
45322291 |
cagattttgaggtcttttcgggcgcattaaggttcttcggctgctgttttcttaccagccagcagtagtatttcattgattttcctgttgtgctgcgctt |
45322192 |
T |
|
| Q |
101 |
ttatttggtcacagtattctgttttggcctttggtgttgttgtgtataggtcatgggcagcatccttttggggtatggtgatggttaggtgttttgttgc |
200 |
Q |
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|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45322191 |
ttttttggtcacagaattctgttttggcctttggtgttgttgtgtataggtcatgggcagcatccttttggggtacagtgatggttaggtgttttgttgc |
45322092 |
T |
|
| Q |
201 |
tgccttttaagcagttcagattggttcctttagtgtctagcagccgcttttgtcacctacaggatttttattgcggagttccgcctatatatggcgcccg |
300 |
Q |
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| T |
45322091 |
tgccttttaagcagttcagattggttcctttagtgtctagcagccgcttttgtcacctacgggatttttattgcggagttccgcctatatacggcgcccg |
45321992 |
T |
|
| Q |
301 |
gttgtatttatttttgccagctagtttgttgtgcttcttgcacggactaagccttaataaggtttgctgtttnnnnnnnntaaaggctcttgatgatgaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45321991 |
gttgtatttatttttgccagctagtttgttgtgcttcttgcacggactaagccttaataaggtttgctgtttaaaaaaaataaaggctcttgatgatgaa |
45321892 |
T |
|
| Q |
401 |
tttgcaagatgtagttctaagatgaggcagcttgagtgttgtttcttataggatgaagcttccatttatggagcattgccagttttgcaaaccctttttt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45321891 |
tttgcaagatgtagttctaagatgaggcagcttgagtgttgtttcttataggatgaagcttccatttatggagcattgccagttttgcaaaccctttttt |
45321792 |
T |
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| Q |
501 |
ccctaagataatcccagaaatattgaatggaaacttatttagaatctttttggcggttttatagtatattaatatt |
576 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45321791 |
ccctaagataatcccagaaatattgaatggaaacttatttagaatctttttggcggttttatagtatattaatatt |
45321716 |
T |
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