View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0962_low_62 (Length: 280)
Name: NF0962_low_62
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 21044378 - 21044295
Alignment:
| Q |
158 |
cacatgggtttcacttcattcaattaaaagaatgagttctaacttatgtagtagcgcagatatttcaaattgaatgtgtctctg |
241 |
Q |
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| T |
21044378 |
cacatgggtttcacttcatttaattaaaagaatgagttctaacttatgtagtagcgcggatatttcaaattgaatgtgtgtctg |
21044295 |
T |
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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 21044507 - 21044463
Alignment:
| Q |
30 |
cttctcgtaccacttcctatcaacaagaagaggtactccttcaac |
74 |
Q |
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| T |
21044507 |
cttctcgtaccacttcctatcaacaagaagcggtactccttcaac |
21044463 |
T |
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