View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0962_low_69 (Length: 258)
Name: NF0962_low_69
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 36 - 243
Target Start/End: Complemental strand, 42944458 - 42944251
Alignment:
| Q |
36 |
acaaaaaagattgaatcctggttttctaatcttcacatttaggtgcattgcccaaaaaatttggttcaacattggcacatgtagcattgacaccaactcc |
135 |
Q |
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| T |
42944458 |
acaaaaaagatcgaatcctggttttctaagcttcacatttaggtgcattgcccaaaaaatttggttcaacgttggcacatgtagcattgacaccaactcc |
42944359 |
T |
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| Q |
136 |
attgaatgtgaatctatgttactaagtaccacttcctcacacggtaccccactgctacaaataagaactacaccattttgtgtggcagaagtgcccgtaa |
235 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42944358 |
attgaatgtgaatctatgttactaagcaccacttcctcacacggtaccccactgctacaaataagaactacaccattttgtgtggcagaagtgcccgtaa |
42944259 |
T |
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| Q |
236 |
tattcttg |
243 |
Q |
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||| |||| |
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| T |
42944258 |
tatccttg |
42944251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 41 - 243
Target Start/End: Complemental strand, 42893711 - 42893506
Alignment:
| Q |
41 |
aaagattgaatcctggttttctaatcttcacatttaggtgcat--tgcccaaaaaatttggttcaacattggcacatgtagcattgacaccaactccatt |
138 |
Q |
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|||||||||||||| ||| ||||| ||||| || |||||| | |||||||||| | |||| ||||||||||||||||||||||||| ||||||||| |
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| T |
42893711 |
aaagattgaatcctagttgtctaagcttcatatgtaggtgtgtgttgcccaaaaattagggtttaacattggcacatgtagcattgacagtaactccatt |
42893612 |
T |
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| Q |
139 |
gaatgtga-atctatgttactaagtaccacttcctcacacggtaccccactgctacaaataagaactacaccattttgtgtggcagaagtgcccgtaata |
237 |
Q |
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|||||||| ||||||||||||||| |||||||||||| | ||||| ||| |||||| |||||||||||||| |||||| |||||| || ||||| ||||| |
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| T |
42893611 |
gaatgtgagatctatgttactaagcaccacttcctcatatggtacaccattgctacgaataagaactacacaattttgagtggcaaaaatgcccataata |
42893512 |
T |
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| Q |
238 |
ttcttg |
243 |
Q |
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|||||| |
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| T |
42893511 |
ttcttg |
42893506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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