View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0962_low_71 (Length: 251)
Name: NF0962_low_71
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_low_71 |
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| [»] scaffold0013 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 40195095 - 40195265
Alignment:
| Q |
9 |
gaacaatatcatttctaaggttgatatgtataatgggtactagtaatatttaaaattcacagtaacgcgctatgacttgtacagacatacaattatgtct |
108 |
Q |
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| T |
40195095 |
gaacaatatcatttctaaggttgacatgtataatgggtactagtaatatttaaaattcacagtaacgcgctatgacttgtacagacatacaattatgtct |
40195194 |
T |
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| Q |
109 |
tttgggttgtcaaatgctccaaatacgtttatgca-caatgaattaagtacttcgaccccttattagtaag |
178 |
Q |
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| T |
40195195 |
ttcgggttgtcaaatgctccaaatacgtttatgcaccaatgaattaagtacttcgactccttattagtaag |
40195265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 40195290 - 40195336
Alignment:
| Q |
205 |
gcaaaatttattaagccaagaaggtgaaaaaatcaccaaaacttgga |
251 |
Q |
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| T |
40195290 |
gcaaaatttattaagccaagaaggtgaaaaaatcaccaaaacttgga |
40195336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 45901 - 45947
Alignment:
| Q |
205 |
gcaaaatttattaagccaagaaggtgaaaaaatcaccaaaacttgga |
251 |
Q |
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| T |
45901 |
gcaaaatttattaagccaagaaagtgaaaccatcaccaaaacttgga |
45947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 40045280 - 40045327
Alignment:
| Q |
203 |
cggcaaaatttattaagccaagaaggtgaaaaaatcaccaaaacttgga |
251 |
Q |
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| T |
40045280 |
cggcaaaatttatta-gccaagaaggtggaagaaccaccaaaacttgga |
40045327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 45991111 - 45991158
Alignment:
| Q |
203 |
cggcaaaatttattaagccaagaaggtgaaaaaatcaccaaaacttgga |
251 |
Q |
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| T |
45991111 |
cggcaaaatttatta-gccaagaaggtggaagaaccaccaaaacttgga |
45991158 |
T |
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