View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0962_low_8 (Length: 585)
Name: NF0962_low_8
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 522; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 8 - 557
Target Start/End: Complemental strand, 18057965 - 18057416
Alignment:
| Q |
8 |
ccaataatatctcaataggtccttaccattatggatcacaacacctacaagaaatggaaattctcaaaaacaagttctttcagcgtctctttgataaaaa |
107 |
Q |
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| T |
18057965 |
ccaacaatatctcaataggtccttaccattatggatcacaacacctacaagaaatggaaattctcaaaaacaagttctttcagcgtctctttgataaaaa |
18057866 |
T |
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| Q |
108 |
aggtgcaaatggagccaaattagaagatgcttggaagtttcttgagaaagaagaaatcaatgctagaagatgttacatgggtgaaatcaaattgagcagt |
207 |
Q |
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| T |
18057865 |
aggtgcaaatggagccaaattagaagatgcttggaagtttcttgagaaagaagagatcaatgctagaagatgttacatgggtgaaatcaaattaagcagt |
18057766 |
T |
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| Q |
208 |
gatgagtttctaaagatgatgttagttgatggttctttcatcattcaactcttgagggatttatcagacaacaaattcaaacatgttccttctcttagta |
307 |
Q |
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| T |
18057765 |
gatgagtttctaaagatgatgttagttgatggttctttcatcattcaactcttgagagatttatcagacaacaaattcaaacatgttccttctcttagta |
18057666 |
T |
|
| Q |
308 |
gatggatgttaccaaccattcgtcgcgagttgataatgctcgaaaaccaacttccaatgtttgttttaacaaaattgtttgatttaaccaataacatgac |
407 |
Q |
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| T |
18057665 |
gatggatgttaccaaccattcgtcgcgagttgataatgctcgaaaaccaacttccaatgtttgttttaacaaaattgtttgaattaaccaataacatgac |
18057566 |
T |
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| Q |
408 |
caatagtcctaaaccacaaatgagtttcaacactcttgccttcaaattcttctacggtttgcttaaacccgagtcgagaaaaacccctaaatgtcaaaca |
507 |
Q |
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| T |
18057565 |
caatagtcctaaaccacaaatgagtttcaacactctttccttcaaattcttctacggtttgcttaaacccgagtcgagaaaaacccctaaatgtcaaaca |
18057466 |
T |
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| Q |
508 |
tcttacaagtacaaagttgaacatgttcttgatcttcttagatacaacat |
557 |
Q |
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| T |
18057465 |
tcttacaagtataaagttgaacatgttcttgatcttcttagatacaacat |
18057416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 16 - 557
Target Start/End: Complemental strand, 15734567 - 15734029
Alignment:
| Q |
16 |
atctcaataggtccttaccattatggatcacaacacctacaagaaatggaaattctcaaaaacaagttctttcagcgtctctttgataaaaaaggtgcaa |
115 |
Q |
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| T |
15734567 |
atctcaataggtccttaccattatggatcacaacacttgcaagaaatggaagttctgaaaaacaagttttttcaccgtctcttcgatccaaacggtgcaa |
15734468 |
T |
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| Q |
116 |
atggagccaaattagaagatgcttggaagtttcttgagaaagaagaaatcaatgctagaagatgttacatgggtgaaatcaaattgagcagtgatgagtt |
215 |
Q |
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| T |
15734467 |
atggatccaaattagaagaggcttgcaagtttcttgagaaagaagaaatcaatgcgcgaaactgttacatgggtgaaatcaaattaagcagtgatgagtt |
15734368 |
T |
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| Q |
216 |
tctaaagatgatgttagttgatggttctttcatcattcaactcttgagggatttatcagacaacaaattcaaacatgttccttctcttagtagatggatg |
315 |
Q |
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| T |
15734367 |
tctaaagatgatgttggttgatggttctttcatcattcaactcttgagggatttatcggataacgaattcaaacatgttccttctcttagtagatggatg |
15734268 |
T |
|
| Q |
316 |
ttaccaaccattcgtcgcgagttgataatgctcgaaaaccaacttccaatgtttgttttaacaaaattgtttgatttaaccaataacatgaccaatagtc |
415 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| | || || ||||| |||| | |||||||| |
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| T |
15734267 |
ttaccaaccattcgtcgcgagatgataatgcttgaaaaccaacttccaatgtttgttttaacaaaacttttcgagctaaccgataa---aaacaatagtc |
15734171 |
T |
|
| Q |
416 |
ctaaaccacaaatgagtttcaacactcttgccttcaaattcttctacggtttgcttaaacccgagtcgagaaaaacccctaaatgtcaaacatcttacaa |
515 |
Q |
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| | ||||||||||||||| ||| |||| | ||||||||||||||| | |||||| || |||| || ||||||||||| ||||||||||||||||||| |
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| T |
15734170 |
ttcatccacaaatgagtttctacaatctttctttcaaattcttctaccgattgcttcaatccgaatcacgaaaaacccctgaatgtcaaacatcttacaa |
15734071 |
T |
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| Q |
516 |
gtacaaagttgaacatgttcttgatcttcttagatacaacat |
557 |
Q |
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| T |
15734070 |
gttcaaaattgaacatgttcttgatcttcttagatacaacat |
15734029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 420 - 557
Target Start/End: Complemental strand, 15728147 - 15728010
Alignment:
| Q |
420 |
accacaaatgagtttcaacactcttgccttcaaattcttctacggtttgcttaaacccgagtcgagaaaaacccctaaatgtcaaacatcttacaagtac |
519 |
Q |
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|||||||||||||||| ||| |||| | |||| |||||||||| |||||| || |||| || ||||||||||| ||||||||||||||||||||| | |
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| T |
15728147 |
accacaaatgagtttctacaatctttctttcatattcttctaccaattgcttcaatccgaatcatgaaaaacccctgaatgtcaaacatcttacaagttc |
15728048 |
T |
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| Q |
520 |
aaagttgaacatgttcttgatcttcttagatacaacat |
557 |
Q |
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||| |||||||||||||||||||||||||||||||||| |
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| T |
15728047 |
aaaattgaacatgttcttgatcttcttagatacaacat |
15728010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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