View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0962_low_81 (Length: 229)
Name: NF0962_low_81
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_low_81 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 36544716 - 36544945
Alignment:
| Q |
1 |
taaaattattaatacagtagatgcgaatcaccaattgaattgcaattagaggtagacataggctatttgtcataaattctggttttaatattttttattt |
100 |
Q |
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| T |
36544716 |
taaaattattaatacagtagatgcgaatcaccaattgaattgcaattagaggtagacataggctatttgtcataaattctggttttaatattttttattt |
36544815 |
T |
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| Q |
101 |
gttccgacatttcaaatttcatatcgctaatgtcttttggttacactgcattttattttatttttgttac---atcgctaatgtggtaaggccaaaa-ag |
196 |
Q |
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| T |
36544816 |
gttccgacatttcaaatttcatatcgctaatgtcttttggttacactgcattt--ttttctttttgttacaatatcgctaatgtggtaaggccaaaagag |
36544913 |
T |
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| Q |
197 |
taggttcttttagaagaaaacacatgaactatt |
229 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
36544914 |
taggttcttttagaag-aaacacatgaactatt |
36544945 |
T |
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