View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0962_low_82 (Length: 229)

Name: NF0962_low_82
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0962_low_82
NF0962_low_82
[»] chr8 (3 HSPs)
chr8 (64-171)||(12930838-12930945)
chr8 (64-171)||(12935584-12935691)
chr8 (64-165)||(26504945-26505044)
[»] chr5 (3 HSPs)
chr5 (64-171)||(29106971-29107078)
chr5 (64-171)||(42911086-42911192)
chr5 (64-153)||(38997231-38997320)
[»] chr4 (9 HSPs)
chr4 (64-171)||(14174099-14174206)
chr4 (64-171)||(14178853-14178960)
chr4 (62-171)||(28606900-28607009)
chr4 (64-171)||(28611664-28611771)
chr4 (64-160)||(44161757-44161853)
chr4 (64-167)||(48826794-48826896)
chr4 (64-171)||(11104630-11104736)
chr4 (67-168)||(48708155-48708256)
chr4 (83-170)||(24726288-24726375)
[»] chr1 (1 HSPs)
chr1 (64-171)||(34907301-34907408)
[»] chr7 (4 HSPs)
chr7 (64-171)||(37040522-37040629)
chr7 (64-171)||(15290390-15290497)
chr7 (69-171)||(12099161-12099263)
chr7 (119-171)||(12082176-12082227)
[»] chr2 (1 HSPs)
chr2 (64-171)||(8539347-8539454)
[»] chr6 (1 HSPs)
chr6 (64-153)||(2100293-2100379)
[»] chr3 (1 HSPs)
chr3 (64-102)||(51302304-51302342)


Alignment Details
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 12930945 - 12930838
Alignment:
Q  64 aacaccaatatttaacgtggaaaaccctctaataccgaggaaaaaaccacgggtcaaactccgaaaaatattccactatattaaagaatattacaatatt 163  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12930945 aacaccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatatt 12930846  T
Q  164 ctctccac 171  Q
    ||||||||    
T  12930845 ctctccac 12930838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 12935691 - 12935584
Alignment:
Q  64 aacaccaatatttaacgtggaaaaccctctaataccgaggaaaaaaccacgggtcaaactccgaaaaatattccactatattaaagaatattacaatatt 163  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12935691 aacaccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatatt 12935592  T
Q  164 ctctccac 171  Q
    ||||||||    
T  12935591 ctctccac 12935584  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 165
Target Start/End: Original strand, 26504945 - 26505044
Alignment:
Q  64 aacaccaatatttaacgtggaaaaccctctaataccgaggaaaaaaccacgggtcaaactccgaaaaatattccactatattaaagaatattacaatatt 163  Q
    |||| |||||||||||||| || ||| ||||||| | ||| |||| |||| |  |||||||| |||||||||| |||||| |||| ||||||||||||||    
T  26504945 aacatcaatatttaacgtg-aataccgtctaataacaaggcaaaa-ccacagtacaaactccaaaaaatattcaactataataaaaaatattacaatatt 26505042  T

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Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 29106971 - 29107078
Alignment:
Q  64 aacaccaatatttaacgtggaaaaccctctaataccgaggaaaaaaccacgggtcaaactccgaaaaatattccactatattaaagaatattacaatatt 163  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29106971 aacaccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatatt 29107070  T
Q  164 ctctccac 171  Q
    ||||||||    
T  29107071 ctctccac 29107078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 42911086 - 42911192
Alignment:
Q  64 aacaccaatatttaacgtggaaaaccctctaataccgaggaaaaaaccacgggtcaaactccgaaaaatattccactatattaaagaatattacaatatt 163  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||    
T  42911086 aacaccaatatttaacatggaaaaccctctaataccgagggaaaaaccacgggacaaactccg-aaaatattccactatatttaagaatattacaatatt 42911184  T
Q  164 ctctccac 171  Q
    ||||||||    
T  42911185 ctctccac 42911192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 38997231 - 38997320
Alignment:
Q  64 aacaccaatatttaacgtggaaaaccctctaataccgaggaaaaaaccacgggtcaaactccgaaaaatattccactatattaaagaata 153  Q
    |||| |||||||| |||| ||||||||||||||| |||   |||||| ||||| |||||||| ||||||| |||| ||||||||||||||    
T  38997231 aacagcaatattttacgtcgaaaaccctctaatatcgaacgaaaaactacgggacaaactccaaaaaataatccattatattaaagaata 38997320  T

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Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 14174206 - 14174099
Alignment:
Q  64 aacaccaatatttaacgtggaaaaccctctaataccgaggaaaaaaccacgggtcaaactccgaaaaatattccactatattaaagaatattacaatatt 163  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14174206 aacaccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatatt 14174107  T
Q  164 ctctccac 171  Q
    ||||||||    
T  14174106 ctctccac 14174099  T

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Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 14178960 - 14178853
Alignment:
Q  64 aacaccaatatttaacgtggaaaaccctctaataccgaggaaaaaaccacgggtcaaactccgaaaaatattccactatattaaagaatattacaatatt 163  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14178960 aacaccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatatt 14178861  T
Q  164 ctctccac 171  Q
    ||||||||    
T  14178860 ctctccac 14178853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 62 - 171
Target Start/End: Original strand, 28606900 - 28607009
Alignment:
Q  62 ttaacaccaatatttaacgtggaaaaccctctaataccgaggaaaaaaccacgggtcaaactccgaaaaatattccactatattaaagaatattacaata 161  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28606900 ttaacaccaatatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaata 28606999  T
Q  162 ttctctccac 171  Q
    ||||||||||    
T  28607000 ttctctccac 28607009  T

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Target: chr4; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 28611664 - 28611771
Alignment:
Q  64 aacaccaatatttaacgtggaaaaccctctaataccgaggaaaaaaccacgggtcaaactccgaaaaatattccactatattaaagaatattacaatatt 163  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28611664 aacaccaatatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatatt 28611763  T
Q  164 ctctccac 171  Q
    ||||||||    
T  28611764 ctctccac 28611771  T

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Target: chr4; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 44161853 - 44161757
Alignment:
Q  64 aacaccaatatttaacgtggaaaaccctctaataccgaggaaaaaaccacgggtcaaactccgaaaaatattccactatattaaagaatattacaat 160  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  44161853 aacaccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaat 44161757  T

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Target: chr4; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 64 - 167
Target Start/End: Original strand, 48826794 - 48826896
Alignment:
Q  64 aacaccaatatttaacgtggaaaaccctctaataccgaggaaaaaaccacgggtcaaactccgaaaaatattccactatattaaagaatattacaatatt 163  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  48826794 aacaccaatatttaacgtggaaaatcctctaataccgagggaaaaatcacgggacaa-ctccgaaaaatattccactatattaaagaatattacaatatt 48826892  T
Q  164 ctct 167  Q
    ||||    
T  48826893 ctct 48826896  T

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Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 11104736 - 11104630
Alignment:
Q  64 aacaccaatatttaacgtggaaaaccctctaataccgaggaaaaaaccacgggtcaaactccgaaaaatattccactatattaaagaatattacaatatt 163  Q
    |||||||||||||||| | ||||| ||||||||| |||||  ||| ||||||| |||||||||||||||||||||| ||||  |||||||||||||||||    
T  11104736 aacaccaatatttaacatagaaaatcctctaatatcgagggtaaa-ccacgggacaaactccgaaaaatattccaccatatctaagaatattacaatatt 11104638  T
Q  164 ctctccac 171  Q
    ||||||||    
T  11104637 ctctccac 11104630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 168
Target Start/End: Original strand, 48708155 - 48708256
Alignment:
Q  67 accaatatttaacgtggaaaaccctctaataccgaggaaaaaaccacgggtcaaactccgaaaaatattccactatattaaagaatattacaatattctc 166  Q
    ||||||||||||| || ||||| || ||||||  ||  |||||||||| | |||||||| ||||||||| || ||||||||| |||||||||||||||||    
T  48708155 accaatatttaacatgaaaaactctataatactaagagaaaaaccacgtgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctc 48708254  T
Q  167 tc 168  Q
    ||    
T  48708255 tc 48708256  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 83 - 170
Target Start/End: Original strand, 24726288 - 24726375
Alignment:
Q  83 gaaaaccctctaataccgaggaaaaaaccacgggtcaaactccgaaaaatattccactatattaaagaatattacaatattctctcca 170  Q
    ||||||| ||||||| | ||| |||| ||||| | ||||||| ||||||||||||| |||||||||||| || | |||||||||||||    
T  24726288 gaaaaccatctaatatcaagggaaaagccacgagacaaactctgaaaaatattccattatattaaagaacataataatattctctcca 24726375  T

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Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 34907408 - 34907301
Alignment:
Q  64 aacaccaatatttaacgtggaaaaccctctaataccgaggaaaaaaccacgggtcaaactccgaaaaatattccactatattaaagaatattacaatatt 163  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34907408 aacaccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatatt 34907309  T
Q  164 ctctccac 171  Q
    ||||||||    
T  34907308 ctctccac 34907301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 37040522 - 37040629
Alignment:
Q  64 aacaccaatatttaacgtggaaaaccctctaataccgaggaaaaaaccacgggtcaaactccgaaaaatattccactatattaaagaatattacaatatt 163  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37040522 aacaccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatatt 37040621  T
Q  164 ctctccac 171  Q
     |||||||    
T  37040622 ttctccac 37040629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 15290497 - 15290390
Alignment:
Q  64 aacaccaatatttaacgtggaaaaccctctaataccgaggaaaaaaccacgggtcaaactccgaaaaatattccactatattaaagaatattacaatatt 163  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||| ||| || |||||||||||| |||||||||||||||||    
T  15290497 aacaccaatatttaacgtggaaaaccctctaataccgaggtataaaccacgggacaaactccaaaagattttccactatatttaagaatattacaatatt 15290398  T
Q  164 ctctccac 171  Q
    ||||||||    
T  15290397 ctctccac 15290390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 69 - 171
Target Start/End: Complemental strand, 12099263 - 12099161
Alignment:
Q  69 caatatttaacgtggaaaaccctctaataccgaggaaaaaaccacgggtcaaactccgaaaaatattccactatattaaagaatattacaatattctctc 168  Q
    |||||||| ||||| |||||||||||||  ||| | |||||||| ||| ||||||||||||||  ||| |||||||||||||||||||||||||||||||    
T  12099263 caatattttacgtgaaaaaccctctaatgacgaaggaaaaaccaagggacaaactccgaaaaaatttcaactatattaaagaatattacaatattctctc 12099164  T
Q  169 cac 171  Q
    |||    
T  12099163 cac 12099161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 12082227 - 12082176
Alignment:
Q  119 aaactccgaaaaatattccactatattaaagaatattacaatattctctccac 171  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||| |||||||    
T  12082227 aaactccaaaaaatattccactatatt-aagaatattacaatattttctccac 12082176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 8539454 - 8539347
Alignment:
Q  64 aacaccaatatttaacgtggaaaaccctctaataccgaggaaaaaaccacgggtcaaactccgaaaaatattccactatattaaagaatattacaatatt 163  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||| ||||||||||||||| |||||||||||||||||    
T  8539454 aacatcaatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaagatattccactatatttaagaatattacaatatt 8539355  T
Q  164 ctctccac 171  Q
     |||||||    
T  8539354 atctccac 8539347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 2100293 - 2100379
Alignment:
Q  64 aacaccaatatttaacgtggaaaaccctctaataccgaggaaaaaaccacgggtcaaactccgaaaaatattccactatattaaagaata 153  Q
    |||| |||||||||| |||||||||||| |||||  |||  ||||   ||||| ||||||||||||||||||||||||||||||||||||    
T  2100293 aacatcaatatttaaggtggaaaaccctttaataatgagcgaaaa---acggggcaaactccgaaaaatattccactatattaaagaata 2100379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 51302342 - 51302304
Alignment:
Q  64 aacaccaatatttaacgtggaaaaccctctaataccgag 102  Q
    |||||||||||||||||||||||||||||||||||||||    
T  51302342 aacaccaatatttaacgtggaaaaccctctaataccgag 51302304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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