View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0962_low_83 (Length: 227)
Name: NF0962_low_83
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_low_83 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 29639939 - 29640162
Alignment:
| Q |
1 |
atataaatggatatgataatgctgatgatgatgattttgtttatgagttttattgcgaatgccgtgtcaaaggtagcaaacgaatgaagaggaagttcac |
100 |
Q |
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| T |
29639939 |
atataaatggatatgataatgctgatgatgatgattttgtttatgagttttattgcgaatgccgtgtcaaaggtagcaaacgaatgaagaggaagttcac |
29640038 |
T |
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| Q |
101 |
acacatgaatttttataagtttcattaaatgttgttcttagtttaagtgctattccgataggcatggatcaattgaagagaagcactgttgttggttatg |
200 |
Q |
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| T |
29640039 |
acacatgaatttttataagtttcattaaatgttgttcttagtttaagtgctattctgataggcatggatcaattgaagagaagcactgttgttggggatg |
29640138 |
T |
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| Q |
201 |
ttttgaaggaattttgttggagat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
29640139 |
ttttgaaggaattttgttggagat |
29640162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 29647960 - 29648180
Alignment:
| Q |
1 |
atataaatggatatgataatgctgatgatgatgattttgtttatgagttttattgcgaatgccgtgtcaaaggtagcaaacgaatgaagaggaagttcac |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| || ||| ||| |||||||||| |||||||||||||| |||| |
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| T |
29647960 |
atataaatggatatgataatgatgatgatgatgattttgtttacgagttttattgcgattgtcgtttcataggtagcaaaggaatgaagaggaagctcac |
29648059 |
T |
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| Q |
101 |
acacatgaatttttataagtttcattaaatgttgttcttag-tttaagtgctattccgataggcatggatcaattgaagagaagcactgttgttggttat |
199 |
Q |
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| T |
29648060 |
agacatgaatttttataagtttcattaacttttgttcttagatttaagtgctattctaaaaggcatggatcatttgaagagaatcactactgttg---at |
29648156 |
T |
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| Q |
200 |
gttttgaaggaattttgttggaga |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
29648157 |
gttttgaaggaattttgttggaga |
29648180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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