View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0962_low_85 (Length: 226)
Name: NF0962_low_85
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_low_85 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 29639963 - 29639767
Alignment:
| Q |
1 |
tcagcattatcatatccatttatatactcatttggatacctaaaatatttcaccctagaattttcaaaacatcttttcgccaaatttccatgaataacta |
100 |
Q |
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| T |
29639963 |
tcagcattatcatatccatttatatactcatttggatacctaaaatatttcaccctagaattttcaaaacatcttttcgccaaatttccatgaataacta |
29639864 |
T |
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| Q |
101 |
gattgtaacacatacgaacatcaagagattcgaggtgaggacaaccatcaaaaatagcaattaaaccatcgttcgtgagtttgtttccccatagctc |
197 |
Q |
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| T |
29639863 |
gattgtaacacatacgaacatcaagagattcgaggtaaggacaaccatcaaaaatagcaattaaaccatcgttcgtgagtttgtttccccatagctc |
29639767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 5 - 197
Target Start/End: Complemental strand, 29647980 - 29647788
Alignment:
| Q |
5 |
cattatcatatccatttatatactcatttggatacctaaaatatttcaccctagaattttcaaaacatcttttcgccaaatttccatgaataactagatt |
104 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| | ||||| ||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
29647980 |
cattatcatatccatttatatactcagttggatacctaaaatattttatcctagtattctcaaaacaccttttcgccaaatttccatgaataactagatt |
29647881 |
T |
|
| Q |
105 |
gtaacacatacgaacatcaagagattcgaggtgaggacaaccatcaaaaatagcaattaaaccatcgttcgtgagtttgtttccccatagctc |
197 |
Q |
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| T |
29647880 |
gtagcacattcgaacatcaagagattcaaggtaaggacaaccatcaaggatagcaattagaccatcattggtgagtttgtttccccaaagctc |
29647788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 159
Target Start/End: Complemental strand, 6046880 - 6046842
Alignment:
| Q |
121 |
tcaagagattcgaggtgaggacaaccatcaaaaatagca |
159 |
Q |
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| T |
6046880 |
tcaagagattcaaggtgaggacaaccatcaagaatagca |
6046842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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