View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0962_low_9 (Length: 580)
Name: NF0962_low_9
Description: NF0962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0962_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 97 - 569
Target Start/End: Original strand, 40694776 - 40695264
Alignment:
| Q |
97 |
atcatcaaaatggtaataaataagatttggagtgtaattatggtttcattggaagtatttgctaaatatagctgcagccagcagttgtgctaat------ |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
40694776 |
atcatcaaaatggtaataaataagatttggagtgtaattatggtttcattggaagtatttg-taaatatagctgcagccagcagttgtgttaattccagc |
40694874 |
T |
|
| Q |
191 |
------------gagaccaaatagaaggagcagggaagcaacaactgannnnnnnnnnnnnnnngagagaagattattagttgttatgtcaccagaaaga |
278 |
Q |
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||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40694875 |
agttgtgttaatgagaccaaatagaaggagcaggggagcaacaactgatttttgttttgtttttgagagaagattattagttgttatgtcaccagaaaga |
40694974 |
T |
|
| Q |
279 |
gtggacactcatagaatctacctaacaaaatggaaacatgacaatttaattatttaatcgtacaaattgggaggactatccatgaaagaaaggccgatcc |
378 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40694975 |
gtggacactcatagaatctaccaaacaaaatggaaacatgacaatttaattatttaatcgtacaaattgggaggactatccatgaaagaaaggccgatcc |
40695074 |
T |
|
| Q |
379 |
aaggataaggctactaaagctcttgctttaattctaccaacaaaattatttttatcaaattttataaacaaaaagacttcatatgcaaacaaaaaatgca |
478 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40695075 |
aagggtaaggctactaaagctcttgctttaattctaccaacaaaattatttttatcaaattttataaacaaaaagacttcatatgcaaacaaaaaatgca |
40695174 |
T |
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| Q |
479 |
tcatattaaaacttgtttaagacctcatttgtgatnnnnnnnttaacgcacattctttttcatcttattgagtttttcgcacactttatgt |
569 |
Q |
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| T |
40695175 |
tcatattaaaacttgtttaagacctcatttgtgat-taaaaattaacgcacattctttttcattttattgagtttttcgcacaccttatgt |
40695264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 476
Target Start/End: Original strand, 22066368 - 22066405
Alignment:
| Q |
439 |
tttataaacaaaaagacttcatatgcaaacaaaaaatg |
476 |
Q |
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| T |
22066368 |
tttataaacaaaaaaacttcacatgcaaacaaaaaatg |
22066405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 437 - 484
Target Start/End: Original strand, 24578119 - 24578166
Alignment:
| Q |
437 |
attttataaacaaaaagacttcatatgcaaacaaaaaatgcatcatat |
484 |
Q |
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| T |
24578119 |
attttataaacaaaaagacttcatatacaaactaaaaatgcctcatat |
24578166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 474
Target Start/End: Complemental strand, 2586527 - 2586485
Alignment:
| Q |
432 |
atcaaattttataaacaaaaagacttcatatgcaaacaaaaaa |
474 |
Q |
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| T |
2586527 |
atcaaattttataagcaaaaaggcctcatatgcaaacaaaaaa |
2586485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 474
Target Start/End: Original strand, 42003785 - 42003881
Alignment:
| Q |
378 |
caaggataaggctactaaagctcttgctttaattctaccaacaaaattatttttatcaaattttataaacaaaaagacttcatatgcaaacaaaaaa |
474 |
Q |
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||||| ||||||||||||||| |||||||| |||| ||||||||| || |||| | |||||||||| ||||| | ||||||||||| ||||| |
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| T |
42003785 |
caagggtaaggctactaaagccgttgctttagttctcccaacaaaaaaataattattatattttataaataaaaatcccacatatgcaaactaaaaa |
42003881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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