View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0963_high_1 (Length: 442)
Name: NF0963_high_1
Description: NF0963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0963_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 9 - 413
Target Start/End: Complemental strand, 37835041 - 37834637
Alignment:
| Q |
9 |
caacaaaatcacgatttcattcactaatcaatcatttcaaatcgacacatccaacaaacataacttcaacacaaacataattcaatgaagaaaatgcaat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
37835041 |
caacaaaatcacgatttcattcactaatcaatcatttcaaatcgagacatggaacaaacataacttcaacgcaaacataattcagtgaagaaaatgcaat |
37834942 |
T |
|
| Q |
109 |
acaacacacatttaggtgaaaataaatattgaatcaaatttaaatgaatgaattaaatgcagaggttgactttaattgatcaatcaattgataaaaatgg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37834941 |
acaacacacatttaggtgaaaataaatattgaatcaaatttaaatgaatgaattaaatgcagaggttgactttaattgatcaatcaattgataaaaatgg |
37834842 |
T |
|
| Q |
209 |
aaagtgattaattccaaataacaattgaatatatatgcaaataaaagcgtaatttacctagaggatgtgtcgattacggtaatgggaacatgatcgggga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37834841 |
aaagtgattaattccaaataacaattgaatatatatgcaaataaaagcgtaatttacctagaggatgtgtcgattacggtaatgggaacatgatcgggga |
37834742 |
T |
|
| Q |
309 |
aatattctgcgggcaagagagtaggcggaagaacgggaggaacggtatcggggaatgagtccgacgctatggcagcgatgaggcttgattttccggtgcc |
408 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37834741 |
aataatctgcgggcaagagagtaggcggaagaacgggaagaacggtatcggggaatgactccgacgctatggcagcgatgaggcttgattttccggtgcc |
37834642 |
T |
|
| Q |
409 |
gcggt |
413 |
Q |
| |
|
||||| |
|
|
| T |
37834641 |
gcggt |
37834637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University