View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0963_high_3 (Length: 360)
Name: NF0963_high_3
Description: NF0963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0963_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 53292701 - 53292434
Alignment:
| Q |
1 |
cgtatatttataactatagttaagctacttttacatatttcccttcaattatgtaagtttttgagcttaatgaccaagaaataacnnnnnnnncaaggat |
100 |
Q |
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| T |
53292701 |
cgtatatttataactatagttaagctacttttacatatttcccttcaattatgtaagtttttgagcttaatgaccaagaaataacaaaaaaaacaaggat |
53292602 |
T |
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| Q |
101 |
tctaagtcggagtacatcagctaggcgagccaaagcgagtgagaagcgaatcataatagaaaatttcaaagttgtatgacaagaaaagtcgttaggggag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53292601 |
tctaagtcggagtacatcagctaggcgagccaaagcgagtgagaagcgaatcataatagaaaatttcaaagttgtatgacaagaaaagtcgttaggggag |
53292502 |
T |
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| Q |
201 |
ctggagc-agagaccccatatagtttacgagaatatgaagagcatattcgctaagcggacaacacatc |
267 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53292501 |
ctggagcgagagaccccatatagtttacgagaatatgaagagcatattcgctaagcggacaacacatc |
53292434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 21914271 - 21914315
Alignment:
| Q |
18 |
agttaagctacttttacatatttcccttcaattatgtaagttttt |
62 |
Q |
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|||||||| |||||||| |||||| ||||||||||||| |||||| |
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| T |
21914271 |
agttaagccacttttacctatttctcttcaattatgtaggttttt |
21914315 |
T |
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