View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0963_low_3 (Length: 407)
Name: NF0963_low_3
Description: NF0963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0963_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 9 - 377
Target Start/End: Original strand, 34923398 - 34923766
Alignment:
| Q |
9 |
agcagagacaaactcccaatctcatcaggaatctttccaccaatctcattgttagccaaattcaaatcattcaacttcttccaactatgaatcccctttg |
108 |
Q |
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| T |
34923398 |
agcacagacaaactcccaatctcatcaggaatctttccaccaatctcattgttagccaaattcaaatcattcaacttcttccaactatgaatcccctttg |
34923497 |
T |
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| Q |
109 |
gtagttccccagagagcctattgttgtgaaaatcaagaatcccaagctggccaagattcaccaaactatcaggaagtgaaccagtgaacatattatcacc |
208 |
Q |
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| T |
34923498 |
gtagttccccagagagcctattgttgtgaaaatcaagaatcccaagctggccaagattcaccaaactatcaggaagtgaaccagtgaacatattatcacc |
34923597 |
T |
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| Q |
209 |
agcagaaaactcaacaagattttccaaccacccaacctcatcaggaacagttccagataaattattcttggacaatatcaacaacgaaaggttccctgct |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34923598 |
agcagaaaactcaacaagattttccaaccacccaacctcatcaggaacagttccagataaattattcttggacaatatcaacaacgaaaggttccctgct |
34923697 |
T |
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| Q |
309 |
ccagcaatagtcttcgaaatagaacccgaaaacgagttatgagcaagctcaagaagatacacatgagga |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34923698 |
ccagcaatagtcttcgaaatagaacccgaaaacgagttatgagcaagctcaagaagatacacatgagga |
34923766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 373
Target Start/End: Complemental strand, 4196008 - 4195644
Alignment:
| Q |
9 |
agcagagacaaactcccaatctcatcaggaatctttccaccaatctcattgttagccaaattcaaatcattcaacttcttccaactatgaatcccctttg |
108 |
Q |
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|||| ||||| ||||||||| || |||||||| || ||||||| |||||| |||||||||||| ||||| | ||||| | |||||||| |||| |
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| T |
4196008 |
agcacagacatactcccaatttcttcaggaattttcccaccaacctcattaccagccaaattcaactcattgagtttcttaagagattgaatcccttttg |
4195909 |
T |
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| Q |
109 |
gtagttccccagagagcctattgttgtgaaaatcaagaatcccaagctggccaagattcaccaaactatcaggaagtgaaccagtgaacatattatcacc |
208 |
Q |
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| || |||||||| || |||| ||||||| |||||||||||||||||| ||||||||| | ||| || || | |||| | | ||| |||| ||| |
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| T |
4195908 |
gaagctccccagaaagattattcttgtgaagatcaagaatcccaagctgatgaagattcacaatactctcgggcaatgaagaattaaaccggttattacc |
4195809 |
T |
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| Q |
209 |
agcagaaaactcaacaagattttccaaccacccaacctcatcaggaacagttccagataaattattcttggacaatatcaacaacgaaaggttccctgct |
308 |
Q |
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| T |
4195808 |
acccgaaaattcctgaagattttccaacaatccaatctcttcaggaatcacaccagagaaattattattcgtcaaagtcaactgagacaaattcccagct |
4195709 |
T |
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| Q |
309 |
ccagcaatagtcttcgaaatagaacccgaaaacgagttatgagcaagctcaagaagatacacatg |
373 |
Q |
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||| |||||||||| ||| ||||| |||||| |||||| | |||||||||||||||| ||||| |
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| T |
4195708 |
ccaccaatagtcttaccaattgaaccagaaaacaagttatcaacaagctcaagaagataaacatg |
4195644 |
T |
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