View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0963_low_4 (Length: 387)
Name: NF0963_low_4
Description: NF0963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0963_low_4 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 132 - 387
Target Start/End: Original strand, 3895045 - 3895300
Alignment:
| Q |
132 |
ctatgcttatgaggtaaaagacagaaccaatgaagcagcaggttctgtgtgggataaagccagagaaggaacaaatagggctgcagagaaggctgagaat |
231 |
Q |
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| T |
3895045 |
ctatgcttatgaggtaaaagacagaaccaatgaagcagcaggttctgtgtgggataaagccagagaaggaacaaatagggctgcagagaaggctgagaat |
3895144 |
T |
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| Q |
232 |
gctggagagaaggctagagattatgcttatgatgcaaaggagagaacaaaggatgctgcagagaatgctggagagagtataagagactatgcttatgatg |
331 |
Q |
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| T |
3895145 |
gctggagagaaggctagagattatgcttatgatgcaaaggagagaacaaaggatgctgcagagaatgctggagagagtataagagactatgcttatgatg |
3895244 |
T |
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| Q |
332 |
ccaaggatagaacaaaggaagctgcagagagtgcgggggagaaagctagagattat |
387 |
Q |
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| T |
3895245 |
ccaaggatagaacaaaggaagctgcagagagtgctggggagaaagctagagattat |
3895300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 169 - 263
Target Start/End: Original strand, 3894962 - 3895056
Alignment:
| Q |
169 |
gcaggttctgtgtgggataaagccagagaaggaacaaatagggctgcagagaaggctgagaatgctggagagaaggctagagattatgcttatga |
263 |
Q |
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| T |
3894962 |
gcaggttcaatgtgggagaaagccaaagaaggaacagacagagctgcagagaaggcagagaatgctggagagaaagctagagactatgcttatga |
3895056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 352
Target Start/End: Original strand, 3895205 - 3895331
Alignment:
| Q |
226 |
gagaatgctggagagaaggctagagattatgcttatgatgcaaaggagagaacaaaggatgctgcagagaatgctggagagagtataagagactatgctt |
325 |
Q |
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| T |
3895205 |
gagaatgctggagagagtataagagactatgcttatgatgccaaggatagaacaaaggaagctgcagagagtgctggggagaaagctagagattatgctt |
3895304 |
T |
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| Q |
326 |
atgatgccaaggatagaacaaaggaag |
352 |
Q |
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| T |
3895305 |
atgatgcaaaggaaagaaccaaggaag |
3895331 |
T |
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