View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0963_low_5 (Length: 360)

Name: NF0963_low_5
Description: NF0963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0963_low_5
NF0963_low_5
[»] chr4 (3 HSPs)
chr4 (30-351)||(18839890-18840226)
chr4 (82-351)||(18850965-18851238)
chr4 (81-351)||(50010642-50010917)
[»] chr8 (1 HSPs)
chr8 (107-351)||(44107919-44108167)
[»] chr1 (1 HSPs)
chr1 (82-349)||(51295242-51295534)


Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 30 - 351
Target Start/End: Complemental strand, 18840226 - 18839890
Alignment:
Q  30 tgcacaaccatattttcatttgaaatttaaccggtgtatcttcatttgaacac--------------agttgattttatcgatgattgttattatatat- 114  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||     
T  18840226 tgcacaaccatattttcatttgaaatataaccggtgtatcttcatttgaacactactataaaatcacagttgattttatcgatgattgttattatatata 18840127  T
Q  115 -caaatacaggaggcatagcttttggtttagacagattggttatgttgctagctggtgctaattcaaccagtgatgtcattgctttcccaaaaacaacaa 213  Q
     |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  18840126 tcaaatacaggaggcatagcttttggtttggacagattggttatgttgctagctggtgctaattcaatcagggatgtcattgctttcccaaaaacaacaa 18840027  T
Q  214 ctgcacagtgtgccctcacgagatcgccttccgaggtggatccccaacagctgagagatctttcaatcactacagagacatttaactcttgatagttttg 313  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18840026 ctgcacagtgtgccctcacgagatcgccttccaaggtggatccccaacagctgagagatctttcaatcactacacagacatttaactcttgatagttttg 18839927  T
Q  314 ttgcctatacccatttttgtactttgttagagaataat 351  Q
    |||| |||| ||||||||||||||||||| ||||||||    
T  18839926 ttgcttata-ccatttttgtactttgttaaagaataat 18839890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 82 - 351
Target Start/End: Complemental strand, 18851238 - 18850965
Alignment:
Q  82 cagttgattttatcgatgattgttattatatatcaaatacaggaggcatagcttttggtttagacagattggttatgttgctagctggtgctaattcaac 181  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||     
T  18851238 cagttgattttatcgataattgttattatatatcaaatgcaggaggcatagcttttggtctggacagattggttatgatgctagctggtgctaattcaat 18851139  T
Q  182 cagtgatgtcattgctttcccaaaaacaacaactgcacagtgtgccctcacgagatcgccttccgaggtggatccccaacagctgagagatctttcaatc 281  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18851138 cagggatgtcattgctttcccaaaaacaacaactgcacagtgtgccctcacgagatcgccttccgaggtggatccccaacagctgagagatctttcaatc 18851039  T
Q  282 actacagaga----catttaactcttgatagttttgttgcctatacccatttttgtactttgttagagaataat 351  Q
    ||| || |||    |||||||||||| |||||| | |||| |||||||||||||||||| || || ||||||||    
T  18851038 actgcatagataggcatttaactcttcatagttatattgcttatacccatttttgtactctggtaaagaataat 18850965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 81 - 351
Target Start/End: Complemental strand, 50010917 - 50010642
Alignment:
Q  81 acagttgattttatcgatgattgttatt-atatatcaaatacaggaggcatagcttttggtttagacagattggttatgttgctagctggtgctaattca 179  Q
    |||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||    
T  50010917 acagttgattttatcgatgattattatttatatatcaaatgcaggaggcatagcttttggtctggacagattggttatgttgctagctggggctaattca 50010818  T
Q  180 accagtgatgtcattgctttcccaaaaacaacaactgcacagtgtgccctcacgagatcgccttccgaggtggatccccaacagctgagagatctttcaa 279  Q
    | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||    
T  50010817 atcagggatgtcattgctttcccaaaaacaacaactgcacagtgtgccctcacgagatcaccttctgaggtggatccccaacagctgaaagatctttcaa 50010718  T
Q  280 tcactacagaga----catttaactcttgatagttttgttgcctatacccatttttgtactttgttagagaataat 351  Q
    |||||||| |||    | |||||||||| |||||| |||||| |||||||||||||||||| ||||| ||||||||    
T  50010717 tcactacatagataggcgtttaactcttcatagttctgttgcttatacccatttttgtactctgttaaagaataat 50010642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 107 - 351
Target Start/End: Complemental strand, 44108167 - 44107919
Alignment:
Q  107 ttatatatcaaatacaggaggcatagcttttggtttagacagattggttatgttgctagctggtgctaattcaaccagtgatgtcattgctttcccaaaa 206  Q
    ||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||    
T  44108167 ttatatatcaaatgcaggaggcatagcttttggtctggacagattggttatgttgctagctggggctaattcaatcagggatgtcattgctttcccaaaa 44108068  T
Q  207 acaacaactgcacagtgtgccctcacgagatcgccttccgaggtggatccccaacagctgagagatctttcaatcactacagaga----catttaactct 302  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||||||||||||||||| |||    | |||||||||    
T  44108067 acaacaactgcacagtgtgccctcacgagatcaccttctgaggtggaaccccaacagctgaaagatctttcaatcactacatagataggcgtttaactct 44107968  T
Q  303 tgatagttttgttgcctatacccatttttgtactttgttagagaataat 351  Q
    | |||||| |||||| |||||||||||||||||| ||||| ||||||||    
T  44107967 tcatagttctgttgcttatacccatttttgtactctgttaaagaataat 44107919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 82 - 349
Target Start/End: Complemental strand, 51295534 - 51295242
Alignment:
Q  82 cagttgattttatcgatgattgttattatatatcaaatacaggaggcatagcttttggtttagacagattggttatgttgctagctggtgctaattcaac 181  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||     
T  51295534 cagttgattttatccatgattgttattatatatcaaatgcaggaggcatagcttttggtctggacagattggttatgttgctagctggtgctaattcaat 51295435  T
Q  182 cagtgatgtcattgctttcccaaa---------------------aacaacaactgcacagtgtgccctcacgagatcgccttccgaggtggatccccaa 260  Q
    ||| ||||||||||||||||||||                     ||||| ||||||||||||||||||||| ||||| ||||||||||||||||||| |    
T  51295434 cagggatgtcattgctttcccaaaaacatcaactgctttcccaaaaacaagaactgcacagtgtgccctcaccagatcaccttccgaggtggatccccga 51295335  T
Q  261 cagctgagagatctttcaatcactacagaga----catttaactcttgatagttttgttgcctatacccatttttgtactttgttagagaata 349  Q
    ||||||| ||||||||||||||||||| |||    |||||||||||| |||||| |||||| |||||||||||||||||| ||||| ||||||    
T  51295334 cagctgaaagatctttcaatcactacatagataggcatttaactcttaatagttatgttgcttatacccatttttgtactctgttaaagaata 51295242  T

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