View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0963_low_8 (Length: 315)
Name: NF0963_low_8
Description: NF0963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0963_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 28 - 304
Target Start/End: Complemental strand, 44743232 - 44742958
Alignment:
| Q |
28 |
aaaaatgtgggaagattatatgtttttcatacatacaagaaagagaagtatttcgaaatattggagggagcgtgagaagagggtgtggaaaacaaattac |
127 |
Q |
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| T |
44743232 |
aaaaatgtgggaagattatatgtttttcatacatacaagaaagagaagtatttcgaaatattggagggagcgtgagaagagggtgtggaaaacaaattcg |
44743133 |
T |
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| Q |
128 |
acatagaaaaacttgtttgggccaaaatggcccaattatctcaactaaatatccaacctctaagaaacgtgtgtatcaacaacagcttagttatgtatga |
227 |
Q |
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| T |
44743132 |
acatagaaaaacttgtttgggccaaaatggcccaattatctcaagtaaatatccaacctctaagaaacgtgtgtatcaacaacagcttagttatgtatga |
44743033 |
T |
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| Q |
228 |
attagtccccccagctctctctcgctctgaaccctaaaattaaacacttcttcatcatccaaaccacctagtttcat |
304 |
Q |
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| T |
44743032 |
attagtccccccagctc--tctcgctctgaaccctaaaattaaacacttcttcatcatccaaaccacctagtttcat |
44742958 |
T |
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Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 101 - 276
Target Start/End: Complemental strand, 53238988 - 53238825
Alignment:
| Q |
101 |
gagaagagggtgtggaaaacaaattacacatagaaaaacttgtttgggccaaaatggcccaattatctcaactaaatatccaacctctaagaaacgtgtg |
200 |
Q |
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|||| ||||||| ||||||||||| |||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||| |
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| T |
53238988 |
gagaggagggtg-ggaaaacaaatgccacataaaaaaacttgtttgggccaaaatggtccaattctctcaactaaatatccaacctttaagaaacgtgtt |
53238890 |
T |
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| Q |
201 |
tatcaacaacagcttagttatgtatgaattagtccccccagctctctctcgctctgaaccctaaaattaaacactt |
276 |
Q |
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| T |
53238889 |
t-----caacagcttagttat---tgaattagt-cccccag--ctctctcgctctgaaccctaaaattaaatactt |
53238825 |
T |
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