View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0964_high_26 (Length: 294)
Name: NF0964_high_26
Description: NF0964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0964_high_26 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 29 - 286
Target Start/End: Original strand, 9334455 - 9334712
Alignment:
| Q |
29 |
attaagaaccatatattgtttcacacaaaaattccaaaaatgttcaagttgatgttgacttaaaggactaatattactatacatttaataaacaaacaaa |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
9334455 |
attaagaaccatatattgtttcacacaaaaattccaaaaatgttcaagttgatgttgacttaaaggattaatattactatacattttataaacaaacaaa |
9334554 |
T |
|
| Q |
129 |
ttttgctgttttatgagacttctataaagcattgtattcacatagtttctcctatcatcactatattccatgtatgttcaacatgttgaacaaatttccc |
228 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9334555 |
tttttctgttttatgagacttctataaagcattgtattcacatagtttctcctatcatcactatattccatgtatgttcaacatgttgaacaaatttccc |
9334654 |
T |
|
| Q |
229 |
ctgcgcttcctctttttctttattgttttctcatgttttcttcttgcatcttcatctc |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9334655 |
ctgcgcttcctctttttctttattgttttctcatgttttcttcttgcatcttcttctc |
9334712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 286
Target Start/End: Original strand, 9332858 - 9332941
Alignment:
| Q |
203 |
tgttcaacatgttgaacaaatttcccctgcgcttcctctttttctttattgttttctcatgttttcttcttgcatcttcatctc |
286 |
Q |
| |
|
||||||||||||| ||||||||| |||||| || |||||| |||||||| |||||||||| | || ||||| ||||||| |||| |
|
|
| T |
9332858 |
tgttcaacatgttcaacaaatttgccctgcactgcctcttattctttatggttttctcatatctttttcttccatcttcttctc |
9332941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 9332788 - 9332826
Alignment:
| Q |
159 |
attgtattcacatagtttctcctatcatcactatattcc |
197 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9332788 |
attgtattcacatagtttctcttatcatcactatattcc |
9332826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University