View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0964_high_28 (Length: 251)
Name: NF0964_high_28
Description: NF0964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0964_high_28 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 43239754 - 43239975
Alignment:
| Q |
30 |
aaaatcatgtgactacatnnnnnnntagtgatctatataaaccaaaatcacgtgtttgatgtgcatagacatacaaaattaagatttcgtggcgagatta |
129 |
Q |
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| T |
43239754 |
aaaatcatgtgactacataaaaaaatagtgatctatataaaccaaaatcatgtgtttgatgtgcatagacatacaaaattaagatttcgtggcgagatta |
43239853 |
T |
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| Q |
130 |
agatgaaattgtttcctaaaaacacgcatttgtctttaaactaattaacttgnnnnnnncttaatttcaaacttcaatcatatgttcctcttaattgaaa |
229 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43239854 |
agatgaaattgtttcctaaaaacacgcctttgtctttaaactaattaacttgtttttttcttaacttcaaacttcaatcatatgttcctcttaattgaaa |
43239953 |
T |
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| Q |
230 |
ctctgaaagaggttcttaatga |
251 |
Q |
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||||||||||| |||||||||| |
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| T |
43239954 |
ctctgaaagagattcttaatga |
43239975 |
T |
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