View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0964_high_38 (Length: 202)
Name: NF0964_high_38
Description: NF0964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0964_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 21993192 - 21993101
Alignment:
| Q |
1 |
agtttcctcctttggctccgtggaagtagaacatcacaccgtctccaccaacaaagcgaggatcgtagcacaatgatccgtaaccatcacag |
92 |
Q |
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| T |
21993192 |
agtttcctcctttggctccgtggaagtagaacatcacaccgtctccaccaacaaagcgaggatcgtagcacaatgatccgtaaccatcacag |
21993101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 22010411 - 22010320
Alignment:
| Q |
1 |
agtttcctcctttggctccgtggaagtagaacatcacaccgtctccaccaacaaagcgaggatcgtagcacaatgatccgtaaccatcacag |
92 |
Q |
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| T |
22010411 |
agtttcctcctttggctccatggaagtagaacatcacaccgtctccaccaacaaatcgaggatcgtaacacaatgaaccgtagccatcacag |
22010320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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