View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0964_high_7 (Length: 455)
Name: NF0964_high_7
Description: NF0964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0964_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 29 - 444
Target Start/End: Complemental strand, 7332853 - 7332438
Alignment:
| Q |
29 |
aatgtccatcttggatttcttcactatgccaaaagtttcaaaccaccataagtagttgctaatgtggatctctgcatctttaattatttctccagctact |
128 |
Q |
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||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
7332853 |
aatgttcatcttggatttcttcagtatgccgaaagtttcaaaccaccataagtagttgctaatgtagatctctgcatcttcaattatttctccagctact |
7332754 |
T |
|
| Q |
129 |
gttctccattgcttttcagtttctgttattaactgaagctgactcaaatccttcaggaaagcatgcagtggaagtagaaggtatatcgaccatctctctt |
228 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7332753 |
gttttccattgcttttcagtttctgttattaactgaagctgacgcaaatccttcaggaaagcatgcagtggaagtagaaggtatatcgaccatctctctt |
7332654 |
T |
|
| Q |
229 |
ccatgccagaaaataggtccatggccatgctcttattcatcaattgatcaaaacttggagaaggcttattctgcatttggttttgagctgctacagatgt |
328 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
7332653 |
ccatgccagaaaataggtccattgccacgctcttattcatcaattgatcaaaacttattgaaggctttttctgcatttggttttgagctgctacagatgt |
7332554 |
T |
|
| Q |
329 |
atggacctctctagctggagatctatcctcctcttcaaatgtaaattgatccagaagacttctactctttgaccttgatttctccattgacgtatggatg |
428 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7332553 |
gtggacctctctagctacagatctatcctcctcttcaaatgtaaattgatccagaagacttctactctttgaccttgatttctccattgacatatggatg |
7332454 |
T |
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| Q |
429 |
tattcggcattttcat |
444 |
Q |
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|||| ||||||||||| |
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| T |
7332453 |
tatttggcattttcat |
7332438 |
T |
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Back To:
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Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 59 - 249
Target Start/End: Complemental strand, 6820484 - 6820294
Alignment:
| Q |
59 |
aaaagtttcaaaccaccataagtagttgctaatgtggatctctgcatctttaattatttctccagctactgttctccattgcttttcagtttctgttatt |
158 |
Q |
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|||||| |||||||||| ||||||||| | |||||||||||| |||||||||||||||||| | |||||||||||||| ||||| ||||| ||| | |
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| T |
6820484 |
aaaagtatcaaaccaccttaagtagtttcaaatgtggatctcagcatctttaattatttcttctgctactgttctccagcaattttctgtttcagtttct |
6820385 |
T |
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| Q |
159 |
aactgaagctgactcaaatccttcaggaaagcatgcagtggaagtagaaggtatatcgaccatctctcttccatgccagaaaataggtcca |
249 |
Q |
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|| ||||| |||||||| ||||| ||||||||||||| |||||| | || || || ||| |||||||||||||| |||||||| |||| |
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| T |
6820384 |
aattgaagatgactcaagtccttgaggaaagcatgcaatggaagcatgagatagatagacggtctctcttccatgctcgaaaatagctcca |
6820294 |
T |
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