View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0964_low_1 (Length: 871)

Name: NF0964_low_1
Description: NF0964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0964_low_1
NF0964_low_1
[»] chr5 (21 HSPs)
chr5 (29-864)||(37869084-37869922)
chr5 (394-553)||(21144023-21144181)
chr5 (384-553)||(20355146-20355314)
chr5 (425-553)||(13153599-13153726)
chr5 (433-617)||(15399611-15399797)
chr5 (384-514)||(42778936-42779064)
chr5 (445-553)||(17668743-17668850)
chr5 (470-535)||(20628040-20628105)
chr5 (470-534)||(31567818-31567882)
chr5 (475-530)||(38082947-38083002)
chr5 (436-537)||(35687296-35687402)
chr5 (499-533)||(38083061-38083095)
chr5 (502-537)||(4561682-4561717)
chr5 (499-537)||(11721524-11721562)
chr5 (499-537)||(23159692-23159730)
chr5 (499-537)||(25919815-25919853)
chr5 (499-537)||(29691216-29691254)
chr5 (499-537)||(38874417-38874455)
chr5 (499-537)||(41123223-41123261)
chr5 (478-539)||(6527313-6527374)
chr5 (418-467)||(10819543-10819592)
[»] chr3 (28 HSPs)
chr3 (393-617)||(55257639-55257864)
chr3 (384-518)||(25124866-25125000)
chr3 (406-553)||(43426358-43426505)
chr3 (403-539)||(17582462-17582600)
chr3 (422-617)||(7308179-7308373)
chr3 (434-553)||(23070058-23070176)
chr3 (384-593)||(17030660-17030869)
chr3 (418-532)||(7013249-7013363)
chr3 (445-553)||(25159022-25159129)
chr3 (421-535)||(30226238-30226352)
chr3 (470-553)||(5303668-5303750)
chr3 (436-537)||(37050164-37050265)
chr3 (444-553)||(18359295-18359403)
chr3 (433-534)||(45008056-45008158)
chr3 (502-540)||(1347666-1347704)
chr3 (499-553)||(17030593-17030645)
chr3 (499-537)||(48689330-48689368)
chr3 (445-513)||(20275533-20275601)
chr3 (499-537)||(300425-300463)
chr3 (499-537)||(5572212-5572249)
chr3 (499-537)||(13041442-13041480)
chr3 (499-537)||(13049519-13049557)
chr3 (499-553)||(18359450-18359503)
chr3 (499-537)||(25387665-25387703)
chr3 (499-537)||(26770000-26770038)
chr3 (499-537)||(52839378-52839416)
chr3 (418-460)||(54571292-54571334)
chr3 (452-497)||(22438731-22438776)
[»] chr2 (27 HSPs)
chr2 (384-553)||(42223156-42223325)
chr2 (418-553)||(16590583-16590716)
chr2 (394-553)||(41906132-41906289)
chr2 (418-553)||(35791130-35791264)
chr2 (418-537)||(31989489-31989607)
chr2 (421-553)||(11478052-11478184)
chr2 (445-617)||(11915181-11915352)
chr2 (418-534)||(31397395-31397510)
chr2 (418-537)||(31377684-31377803)
chr2 (435-553)||(41567315-41567432)
chr2 (455-526)||(29878811-29878882)
chr2 (437-497)||(23381343-23381403)
chr2 (422-493)||(13315985-13316055)
chr2 (499-537)||(17188731-17188769)
chr2 (499-536)||(15580626-15580663)
chr2 (436-535)||(959662-959761)
chr2 (500-539)||(18155450-18155489)
chr2 (499-537)||(15543794-15543832)
chr2 (499-537)||(16139057-16139095)
chr2 (499-537)||(16204388-16204426)
chr2 (499-537)||(19272920-19272958)
chr2 (499-537)||(25293416-25293453)
chr2 (499-537)||(30497407-30497445)
chr2 (499-553)||(35791059-35791112)
chr2 (499-537)||(38128019-38128057)
chr2 (470-531)||(24486596-24486657)
chr2 (502-543)||(30602594-30602635)
[»] chr7 (33 HSPs)
chr7 (394-549)||(9689291-9689446)
chr7 (394-540)||(43393849-43393996)
chr7 (384-553)||(1853233-1853398)
chr7 (384-553)||(42957424-42957593)
chr7 (403-553)||(3092292-3092441)
chr7 (394-543)||(15635228-15635378)
chr7 (445-598)||(2936144-2936294)
chr7 (418-543)||(45687698-45687822)
chr7 (403-514)||(11625113-11625224)
chr7 (445-553)||(24812925-24813032)
chr7 (418-543)||(15011935-15012060)
chr7 (456-553)||(19377094-19377191)
chr7 (418-553)||(27082594-27082728)
chr7 (418-553)||(27195573-27195707)
chr7 (444-553)||(25601798-25601906)
chr7 (445-549)||(10394471-10394574)
chr7 (469-537)||(28696661-28696729)
chr7 (434-532)||(27484941-27485040)
chr7 (445-553)||(14675581-14675681)
chr7 (470-532)||(22859342-22859404)
chr7 (500-553)||(2936339-2936391)
chr7 (418-467)||(18268280-18268329)
chr7 (431-472)||(26876617-26876658)
chr7 (499-537)||(2300901-2300938)
chr7 (499-553)||(8391027-8391079)
chr7 (499-537)||(17051895-17051933)
chr7 (499-537)||(21022469-21022507)
chr7 (326-380)||(25583989-25584043)
chr7 (499-553)||(27484820-27484872)
chr7 (453-535)||(28543319-28543400)
chr7 (499-537)||(35158262-35158299)
chr7 (499-552)||(15011865-15011917)
chr7 (468-553)||(25898629-25898713)
[»] chr4 (28 HSPs)
chr4 (394-549)||(13555668-13555823)
chr4 (384-553)||(5283732-5283900)
chr4 (384-553)||(8810010-8810178)
chr4 (404-543)||(42161367-42161507)
chr4 (421-553)||(49277727-49277858)
chr4 (421-539)||(49533201-49533319)
chr4 (444-553)||(16875937-16876045)
chr4 (418-553)||(9780392-9780528)
chr4 (444-553)||(16734243-16734350)
chr4 (453-553)||(8678889-8678989)
chr4 (470-532)||(25786326-25786388)
chr4 (444-552)||(21744891-21744998)
chr4 (473-536)||(29172618-29172681)
chr4 (499-537)||(16589236-16589274)
chr4 (489-530)||(18509185-18509226)
chr4 (502-543)||(29172756-29172797)
chr4 (500-552)||(49277880-49277931)
chr4 (499-537)||(3652529-3652567)
chr4 (499-553)||(9780546-9780599)
chr4 (499-537)||(27626925-27626963)
chr4 (499-537)||(29104419-29104457)
chr4 (499-553)||(29700563-29700616)
chr4 (499-537)||(36395414-36395452)
chr4 (571-617)||(44005712-44005757)
chr4 (499-537)||(49166902-49166940)
chr4 (500-550)||(49533131-49533180)
chr4 (500-553)||(23091876-23091928)
chr4 (510-543)||(37589620-37589653)
[»] scaffold0004 (1 HSPs)
scaffold0004 (405-550)||(82300-82444)
[»] chr8 (29 HSPs)
chr8 (405-553)||(9235440-9235587)
chr8 (404-617)||(23288999-23289212)
chr8 (384-553)||(5600247-5600413)
chr8 (384-553)||(5640207-5640373)
chr8 (418-534)||(13373258-13373373)
chr8 (384-514)||(14698164-14698293)
chr8 (421-535)||(24375771-24375884)
chr8 (401-525)||(24528887-24529011)
chr8 (421-540)||(23245660-23245779)
chr8 (468-543)||(11908474-11908549)
chr8 (452-543)||(12719159-12719249)
chr8 (473-535)||(8980741-8980803)
chr8 (471-553)||(28786366-28786447)
chr8 (499-553)||(13980023-13980076)
chr8 (499-537)||(10761679-10761717)
chr8 (499-537)||(25653784-25653822)
chr8 (499-531)||(28786519-28786551)
chr8 (500-536)||(28999510-28999546)
chr8 (510-553)||(24754628-24754670)
chr8 (499-537)||(9662273-9662311)
chr8 (499-537)||(11830433-11830471)
chr8 (499-537)||(12478831-12478869)
chr8 (499-537)||(13558799-13558837)
chr8 (499-537)||(32684641-32684679)
chr8 (499-537)||(34845363-34845401)
chr8 (499-537)||(41509459-41509497)
chr8 (447-540)||(11311297-11311390)
chr8 (471-536)||(25057020-25057085)
chr8 (499-536)||(36637251-36637288)
[»] chr1 (31 HSPs)
chr1 (384-532)||(25059885-25060033)
chr1 (401-553)||(5469440-5469592)
chr1 (445-553)||(13437010-13437117)
chr1 (418-553)||(33864186-33864321)
chr1 (418-553)||(33916601-33916736)
chr1 (394-553)||(17890132-17890290)
chr1 (452-553)||(7261487-7261587)
chr1 (423-534)||(24023179-24023289)
chr1 (418-553)||(44078664-44078798)
chr1 (480-617)||(22315145-22315282)
chr1 (453-545)||(5882997-5883089)
chr1 (421-533)||(44228413-44228524)
chr1 (470-543)||(15654059-15654132)
chr1 (432-535)||(16639555-16639659)
chr1 (418-534)||(22151971-22152087)
chr1 (463-526)||(23621217-23621280)
chr1 (463-526)||(23737996-23738059)
chr1 (470-526)||(23652563-23652619)
chr1 (503-553)||(9240531-9240580)
chr1 (499-537)||(19967820-19967858)
chr1 (470-553)||(9240654-9240736)
chr1 (499-537)||(21770981-21771019)
chr1 (381-459)||(22315288-22315365)
chr1 (499-537)||(23161905-23161942)
chr1 (499-537)||(26190988-26191026)
chr1 (499-537)||(27666174-27666212)
chr1 (499-553)||(33864115-33864168)
chr1 (499-553)||(33916754-33916807)
chr1 (499-553)||(44228339-44228392)
chr1 (494-543)||(6667399-6667448)
chr1 (499-536)||(22387224-22387261)
[»] chr6 (19 HSPs)
chr6 (384-543)||(9044531-9044690)
chr6 (401-543)||(25167002-25167144)
chr6 (401-534)||(9662835-9662968)
chr6 (422-553)||(3816552-3816681)
chr6 (455-531)||(20757608-20757684)
chr6 (470-532)||(33198608-33198670)
chr6 (499-617)||(3816703-3816820)
chr6 (452-534)||(6759742-6759824)
chr6 (503-553)||(33200018-33200067)
chr6 (470-553)||(334912-334993)
chr6 (499-537)||(1227934-1227972)
chr6 (499-537)||(2270742-2270780)
chr6 (500-542)||(18274361-18274403)
chr6 (499-537)||(21544388-21544426)
chr6 (499-537)||(29942605-29942642)
chr6 (500-537)||(686551-686587)
chr6 (499-536)||(16119918-16119955)
chr6 (500-537)||(22495780-22495817)
chr6 (499-536)||(31174052-31174089)
[»] scaffold0067 (1 HSPs)
scaffold0067 (417-532)||(25844-25960)
[»] scaffold0188 (1 HSPs)
scaffold0188 (455-617)||(13286-13447)
[»] scaffold0003 (1 HSPs)
scaffold0003 (463-537)||(306688-306762)
[»] scaffold0110 (1 HSPs)
scaffold0110 (444-531)||(23194-23281)
[»] scaffold0142 (2 HSPs)
scaffold0142 (488-543)||(34509-34564)
scaffold0142 (384-492)||(34884-34993)
[»] scaffold1462 (1 HSPs)
scaffold1462 (499-537)||(337-375)
[»] scaffold0022 (1 HSPs)
scaffold0022 (499-537)||(63111-63149)
[»] scaffold0010 (1 HSPs)
scaffold0010 (499-553)||(145149-145201)
[»] scaffold0002 (1 HSPs)
scaffold0002 (499-537)||(432475-432513)


Alignment Details
Target: chr5 (Bit Score: 624; Significance: 0; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 29 - 864
Target Start/End: Original strand, 37869084 - 37869922
Alignment:
Q  29 acatgaaacattctcattaaatcacaaaaataacatgagctgttacatgcttacaaattacagccaacaacccattttcccatattgttatcaagataaa 128  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  37869084 acatgaaacattctcattaaatcacaaaaacaacatgagctgttacatgcttacaaattacagccaacaacccattttcccatactgttataaagataaa 37869183  T
Q  129 ttgaattggtttttgttattgaactccctatttcaagtataagtgata---taaaattatgaggacagacttttaaaaaatggtttgactcatataaagt 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  37869184 ttgaattggtttttgttattgaactccctatttcaagtataagtgatagtataaaattatgaggacagactattaaaaaatggtttgactcgtataaagt 37869283  T
Q  226 aaaacataaagcatcgatattacaacacattcattatttgttacgcatttacataatatccacccttgatttgttagttaatggttgaatggttgataat 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37869284 aaaacataaagcatcgatattacaacacattcattatttgttacgcatttacataatatccatccttgatttgttagttaatggttgaatggttgataat 37869383  T
Q  326 atattactcacttcatactctacagtgaatcgctcactttagaagagcctgatcctaaaaaatcaataatatgggagggggtaaactgaaatatcgatga 425  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37869384 atattactcacttcatactctacggtgaatcgctcactttagaagagcctgatcctaaaaaatcaatgatatgggagggggtaaactgaaatatcgatga 37869483  T
Q  426 tatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatctt 525  Q
    ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37869484 tatggcaggaggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatctt 37869583  T
Q  526 caaattacaaggttggaaatctaaacaannnnnnnnacaggggataaaccgaaaatcgttaatattactggagattaaacatatattaacccnnnnnnna 625  Q
    ||||||||||||||||||||||||||||        ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||       |    
T  37869584 caaattacaaggttggaaatctaaacaattttttttacaggagataaaccgaaaatcgttaatattacaggagattaaacatatattaacccttttttta 37869683  T
Q  626 tatcaagtccttttacatggtcctttnnnnnnnngtaattttatatta-ttttttctttggtgaaaactacctttaaacaaacttgttacnnnnnnnnct 724  Q
    ||||||||||||||||||||||||||        |||||||||||||| |||||||||||||||||||||||||||||||||||||||||        ||    
T  37869684 tatcaagtccttttacatggtcctttaaaaaaaagtaattttatattatttttttctttggtgaaaactacctttaaacaaacttgttac-tttttttct 37869782  T
Q  725 ctcgtaagtttaactcagttgatagagacaaagttcgaggttcagacctcgaccaccnnnnnnnntttgttactttttagttaaaaatgaaatttgtgaa 824  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||| ||| ||||||         ||||||||||||||||||||||||||||||||||    
T  37869783 ctcgtaagtttagctcagttgataaagacaaagttcgaggttcagatctcaaccaccaaaaaaaacttgttactttttagttaaaaatgaaatttgtgaa 37869882  T
Q  825 gtttatgtgttaacgtaataaatttttattatattcttcg 864  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  37869883 gtttatgtgttaacgtaataaatttttattatattgttcg 37869922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 394 - 553
Target Start/End: Complemental strand, 21144181 - 21144023
Alignment:
Q  394 atatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaattt 493  Q
    |||||| | |||||||||| |||||||||||||||  ||| |||||||   |||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  21144181 atatggcaaggggtaaactaaaatatcgatgatatgacagagggtaaaccaaaattctctcaaattacaaggggcaaaagtacatcaaattttgtaattt 21144082  T
Q  494 gatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    |||| |||||||||||||||||||| ||||||||||||||| |||||| |||||||||||    
T  21144081 gatgccatgaaggtccaaaatcaaaaaatcttcaaattacagggttgg-aatctaaacaa 21144023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 384 - 553
Target Start/End: Original strand, 20355146 - 20355314
Alignment:
Q  384 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaat 483  Q
    |||||| || |||||| |||||||||||  ||||||||||||||| ||||||||||||  |||||||  |||||||| ||||||||| ||||||||||||    
T  20355146 aaaatcgatgatatggtagggggtaaaccaaaatatcgatgatattgcagggggtaaaccgaaattccttcaaattacaaggggcaagagtaccttaaat 20355245  T
Q  484 tttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    ||| |||||||||| ||| ||||| |||||||||| ||||||||||||||| | |||| |||||||||||    
T  20355246 tttttaatttgatgccatcaaggttcaaaatcaaaaaatcttcaaattacaggattgg-aatctaaacaa 20355314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 425 - 553
Target Start/End: Complemental strand, 13153726 - 13153599
Alignment:
Q  425 atatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatct 524  Q
    |||| ||||||||||||  ||||||||||||||||| ||||| | |||||||| ||||||||||| |||||||  ||||||||||||||| ||  |||||    
T  13153726 atatggcagggggtaaaccgaaattctctcaaattacaagggacgaaagtaccgtaaattttgtattttgatgctatgaaggtccaaaataaagaaatct 13153627  T
Q  525 tcaaattacaaggttggaaatctaaacaa 553  Q
    ||||||||||||||||| |||||||||||    
T  13153626 tcaaattacaaggttgg-aatctaaacaa 13153599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 433 - 617
Target Start/End: Complemental strand, 15399797 - 15399611
Alignment:
Q  433 gggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaat--caaagaatcttcaaat 530  Q
    |||||||||| |||||| |||||||||| ||||||| ||||||||||||||||||||||||||||  |||||||||||||||   ||| |||||||||||    
T  15399797 gggggtaaatcgaaattatctcaaattacaaggggcgaaagtaccttaaattttgtaatttgatgttatgaaggtccaaaataaaaaaaaatcttcaaat 15399698  T
Q  531 tacaaggttggaaatctaaacaannnnnnnnaca-ggggataaaccgaaaatcgttaatattactggagattaaacatatattaaccc 617  Q
    |||| ||||||  ||||||||||        ||| || | ||||||  |||||| ||||||||| ||||| |||||||||||||||||    
T  15399697 tacagggttgg-gatctaaacaaatttttttacatggaggtaaaccagaaatcgctaatattacaggagagtaaacatatattaaccc 15399611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 384 - 514
Target Start/End: Original strand, 42778936 - 42779064
Alignment:
Q  384 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaat 483  Q
    ||||||||| |||||| ||||||||| ||||||||||||||||||   ||||  ||||  ||||||||||||||||| ||||| | ||||||||||||||    
T  42778936 aaaatcaatgatatggcagggggtaacctgaaatatcgatgatatgataggga-taaaccgaaattctctcaaattacaaggg-cgaaagtaccttaaat 42779033  T
Q  484 tttgtaatttgatgacatgaaggtccaaaat 514  Q
    |||||||||||||| ||||||||||||||||    
T  42779034 tttgtaatttgatgtcatgaaggtccaaaat 42779064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 445 - 553
Target Start/End: Original strand, 17668743 - 17668850
Alignment:
Q  445 aaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaa 544  Q
    |||||||||||||||| | ||||| |||||||||||||||||  | ||||||  |||||| |||||||||||||||||||| ||||||||| ||| ||||    
T  17668743 aaattctctcaaattacagggggcgaaagtaccttaaattttaaattttgatatcatgaaagtccaaaatcaaagaatctttaaattacaatgtt-gaaa 17668841  T
Q  545 tctaaacaa 553  Q
    ||| |||||    
T  17668842 tcttaacaa 17668850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 470 - 535
Target Start/End: Complemental strand, 20628105 - 20628040
Alignment:
Q  470 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaa 535  Q
    |||||||| ||||||||||||||||||| || |||||||||||| |||||||| ||||||||||||    
T  20628105 aaagtaccataaattttgtaatttgatgccaagaaggtccaaaaccaaagaattttcaaattacaa 20628040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 470 - 534
Target Start/End: Original strand, 31567818 - 31567882
Alignment:
Q  470 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattaca 534  Q
    |||||||  ||||||||||||||||||  ||||||||||||||| |||| |||||||||||||||    
T  31567818 aaagtactataaattttgtaatttgatatcatgaaggtccaaaaccaaaaaatcttcaaattaca 31567882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 475 - 530
Target Start/End: Complemental strand, 38083002 - 38082947
Alignment:
Q  475 accttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaat 530  Q
    ||||||||||| |||||||||||  ||| |||| ||||||||||||||||||||||    
T  38083002 accttaaatttcgtaatttgatgctatgtaggttcaaaatcaaagaatcttcaaat 38082947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 436 - 537
Target Start/End: Complemental strand, 35687402 - 35687296
Alignment:
Q  436 ggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaa-----aatcaaagaatcttcaaat 530  Q
    ||||||| ||||||  ||||||||   ||||||  ||||||  |||||||||||||||||||  ||||||||||||     ||||||| |||||||||||    
T  35687402 ggtaaatcgaaatttgctcaaatttacaggggcggaagtactataaattttgtaatttgatgctatgaaggtccaaaatgtaatcaaaaaatcttcaaat 35687303  T
Q  531 tacaagg 537  Q
    |||||||    
T  35687302 tacaagg 35687296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 499 - 533
Target Start/End: Original strand, 38083061 - 38083095
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattac 533  Q
    |||||||||||||||||||||||||||||||||||    
T  38083061 catgaaggtccaaaatcaaagaatcttcaaattac 38083095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 502 - 537
Target Start/End: Complemental strand, 4561717 - 4561682
Alignment:
Q  502 gaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||||| ||||||||||||||||||    
T  4561717 gaaggtccaaaatcaaaaaatcttcaaattacaagg 4561682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 11721524 - 11721562
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  11721524 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 11721562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 23159692 - 23159730
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  23159692 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 23159730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 25919815 - 25919853
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  25919815 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 25919853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 29691216 - 29691254
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  29691216 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 29691254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 38874455 - 38874417
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  38874455 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 38874417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 41123261 - 41123223
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  41123261 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 41123223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 478 - 539
Target Start/End: Complemental strand, 6527374 - 6527313
Alignment:
Q  478 ttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggtt 539  Q
    |||||||||||||||| ||| ||||||  ||||||| |||| ||||||||||| ||| ||||    
T  6527374 ttaaattttgtaattttatgtcatgaaaatccaaaaccaaataatcttcaaatcacagggtt 6527313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 467
Target Start/End: Complemental strand, 10819592 - 10819543
Alignment:
Q  418 atcgatgatatagcagggggtaaatagaaattctctcaaattataagggg 467  Q
    ||||| ||||| ||||||||||||| |||||| |||||||||| ||||||    
T  10819592 atcgaagatatggcagggggtaaatcgaaattttctcaaattacaagggg 10819543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 9e-51; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 393 - 617
Target Start/End: Complemental strand, 55257864 - 55257639
Alignment:
Q  393 aatatgggagggggtaaactgaaatatcgatgatatagcagggg-gtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaat 491  Q
    ||||||| | |||||||||||||||||||||||||| ||||||| |||||  |||||||| |||||||||||||||| ||||||||||||||||||||||    
T  55257864 aatatggcaaggggtaaactgaaatatcgatgatatggcaggggtgtaaactgaaattctatcaaattataaggggcgaaagtaccttaaattttgtaat 55257765  T
Q  492 ttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaannnnnnnnacaggggataaaccgaaaatcgttaatatt 591  Q
    |||||| |||||||||||||||| ||| ||||||||||||| | |||||| |||||||||||        ||||||| ||||||| |||||| |||||||    
T  55257764 ttgatgccatgaaggtccaaaataaaaaaatcttcaaattatagggttgg-aatctaaacaattttttttacagggggtaaaccggaaatcgctaatatt 55257666  T
Q  592 ac-tggagattaaacatatattaaccc 617  Q
    ||  || |  |||||||||||||||||    
T  55257665 acagggggggtaaacatatattaaccc 55257639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 384 - 518
Target Start/End: Complemental strand, 25125000 - 25124866
Alignment:
Q  384 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaat 483  Q
    |||||| || |||||| |||||||||||||||||||||||||||| ||||||||||||  ||||||||| ||||||| ||||||| ||||||||||||||    
T  25125000 aaaatcgatgatatggaagggggtaaactgaaatatcgatgatatggcagggggtaaactgaaattctcccaaattacaaggggcgaaagtaccttaaat 25124901  T
Q  484 tttgtaatttgatgacatgaaggtccaaaatcaaa 518  Q
    ||| |||||||||| ||||||||||||||||||||    
T  25124900 tttataatttgatgccatgaaggtccaaaatcaaa 25124866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 406 - 553
Target Start/End: Original strand, 43426358 - 43426505
Alignment:
Q  406 gtaaactgaaatatcgatgatatagcaggggg-taaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaa 504  Q
    ||||||||||||||||||||||| |||||||| ||||  ||||||||||||||||| | ||||||||||||||||||||||||||||||||||  |||||    
T  43426358 gtaaactgaaatatcgatgatatggcaggggggtaaaccgaaattctctcaaattacagggggcaaaagtaccttaaattttgtaatttgatgctatgaa 43426457  T
Q  505 ggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    |||| ||||||||| ||||||||||||||| |||| | |||||||||||    
T  43426458 ggtctaaaatcaaaaaatcttcaaattacagggttcg-aatctaaacaa 43426505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 403 - 539
Target Start/End: Original strand, 17582462 - 17582600
Alignment:
Q  403 ggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatg 502  Q
    ||||| ||||||||||||||| |||| ||||| ||||||  |||| |||||||||||| ||||||| ||||||||||||||||||||||||||||  |||    
T  17582462 ggggttaactgaaatatcgattatatggcaggaggtaaaccgaaaatctctcaaattacaaggggcgaaagtaccttaaattttgtaatttgatgctatg 17582561  T
Q  503 aaggtccaaaat--caaagaatcttcaaattacaaggtt 539  Q
    ||||||||||||   ||| ||||||||||||||||||||    
T  17582562 aaggtccaaaataaaaaaaaatcttcaaattacaaggtt 17582600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 422 - 617
Target Start/End: Original strand, 7308179 - 7308373
Alignment:
Q  422 atgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaa 521  Q
    ||||||| ||||||||||||  ||||||||||||||||| | ||||| |||||||||||||||||||||||||||| |||||||||| ||||| ||| ||    
T  7308179 atgatatggcagggggtaaaccgaaattctctcaaattaca-ggggcgaaagtaccttaaattttgtaatttgatgccatgaaggtcaaaaataaaaaaa 7308277  T
Q  522 tcttcaaattacaaggttggaaatctaaacaannnnnnnnacaggggataaaccgaaaatcgttaatattactg-gagattaaacatatattaaccc 617  Q
    ||||||||||| | |||||| ||||| |||||        ||||||| ||||||  |||||| ||||||||| | | | ||||||||||||||||||    
T  7308278 tcttcaaattatagggttgg-aatctgaacaattttttttacagggggtaaaccagaaatcgctaatattacagaggggttaaacatatattaaccc 7308373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 434 - 553
Target Start/End: Complemental strand, 23070176 - 23070058
Alignment:
Q  434 ggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattac 533  Q
    ||||||||| ||||||||||||||||| ||||||| ||||||||||||||||| |||||||||| || |||||| |||||||||| |||||| |||||||    
T  23070176 ggggtaaatcgaaattctctcaaattagaaggggcgaaagtaccttaaattttataatttgatgtcacgaaggttcaaaatcaaaaaatctttaaattac 23070077  T
Q  534 aaggttggaaatctaaacaa 553  Q
     ||||| |||||||||||||    
T  23070076 taggtt-gaaatctaaacaa 23070058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 384 - 593
Target Start/End: Original strand, 17030660 - 17030869
Alignment:
Q  384 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaat 483  Q
    ||||||||| |||||  ||| ||||| |||||||||||||||||| ||||| ||||||   |||||||||||| ||| | ||||  ||||||||||||||    
T  17030660 aaaatcaatgatatgtcaggtggtaacctgaaatatcgatgatatggcaggaggtaaaccaaaattctctcaatttaca-ggggtgaaagtaccttaaat 17030758  T
Q  484 tttgtaatttgatgacatgaaggtccaaaatc-aaagaatcttcaaattacaaggttggaaatctaaacaannnnnnnnacagggg-ataaaccgaaaat 581  Q
    |||||||||||||| ||||||||||||||||| ||| |||||| |||||| | |||| |||||| ||||||        ||||||| |||||||| ||||    
T  17030759 tttgtaatttgatgccatgaaggtccaaaatcaaaaaaatctttaaattagagggtt-gaaatcaaaacaaagttttttacaggggaataaaccggaaat 17030857  T
Q  582 cgttaatattac 593  Q
    || |||||||||    
T  17030858 cgctaatattac 17030869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 418 - 532
Target Start/End: Complemental strand, 7013363 - 7013249
Alignment:
Q  418 atcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 517  Q
    |||||||| || |||||||||||||  |||||||||||||||| | ||||| |||||| ||||||||||||||||||||  |||||| ||||||||||||    
T  7013363 atcgatgacatggcagggggtaaatctaaattctctcaaattacatggggcgaaagtatcttaaattttgtaatttgataccatgaaagtccaaaatcaa 7013264  T
Q  518 agaatcttcaaatta 532  Q
    | |||||||||||||    
T  7013263 ataatcttcaaatta 7013249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 445 - 553
Target Start/End: Original strand, 25159022 - 25159129
Alignment:
Q  445 aaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaa 544  Q
    |||||||||||||||| | | ||| ||| |||||||||||||||||||||||| |||||| ||||||||||||| ||| |||||||||||||||| | ||    
T  25159022 aaattctctcaaattacaggaggcgaaaataccttaaattttgtaatttgatgccatgaacgtccaaaatcaaaaaatattcaaattacaaggttag-aa 25159120  T
Q  545 tctaaacaa 553  Q
    |||||||||    
T  25159121 tctaaacaa 25159129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 421 - 535
Target Start/End: Original strand, 30226238 - 30226352
Alignment:
Q  421 gatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaaga 520  Q
    ||||||||  |||||||||||   |||||  |||||| || ||||||  |||||||| |||||||||||||||| || ||||||||||||||||||||||    
T  30226238 gatgatatgacagggggtaaactaaaatttgctcaaactacaaggggtgaaagtaccataaattttgtaatttgttgtcatgaaggtccaaaatcaaaga 30226337  T
Q  521 atcttcaaattacaa 535  Q
    |||||||||||||||    
T  30226338 atcttcaaattacaa 30226352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 470 - 553
Target Start/End: Original strand, 5303668 - 5303750
Alignment:
Q  470 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    |||||||||||| || |||||||||||| |||||||||| |||| |||||||||||||||||||| |||||| |||||||||||    
T  5303668 aaagtaccttaagttctgtaatttgatgtcatgaaggtctaaaaccaaagaatcttcaaattacagggttgg-aatctaaacaa 5303750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 436 - 537
Target Start/End: Original strand, 37050164 - 37050265
Alignment:
Q  436 ggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgac-atgaaggtccaaaatcaaagaatcttcaaattaca 534  Q
    ||||||| ||||||  ||||||||| ||||||| ||||||||||||||||||||| |||||| | | ||| ||||||||||||||||||||||||||| |    
T  37050164 ggtaaatcgaaatttgctcaaattacaaggggcgaaagtaccttaaattttgtaa-ttgatgtcaaagaatgtccaaaatcaaagaatcttcaaattata 37050262  T
Q  535 agg 537  Q
    |||    
T  37050263 agg 37050265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 444 - 553
Target Start/End: Complemental strand, 18359403 - 18359295
Alignment:
Q  444 gaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 543  Q
    ||||||||||||||||| |  || | |||||||||||||||||||||||||||| |||| |  || ||||  ||||||||||||||||||| |||||| |    
T  18359403 gaaattctctcaaattacagcggactaaagtaccttaaattttgtaatttgatgccatgtatatctaaaactaaagaatcttcaaattacagggttgg-a 18359305  T
Q  544 atctaaacaa 553  Q
    ||||||||||    
T  18359304 atctaaacaa 18359295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 433 - 534
Target Start/End: Original strand, 45008056 - 45008158
Alignment:
Q  433 gggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaat-caaagaatcttcaaatt 531  Q
    |||||||||  |||||| | |||||||| ||||||| ||||| |||||||||||||||||||||| || ||| |||||||||  ||| ||||||||||||    
T  45008056 gggggtaaaccgaaattttatcaaattacaaggggcgaaagttccttaaattttgtaatttgatgccaagaatgtccaaaataaaaaaaatcttcaaatt 45008155  T
Q  532 aca 534  Q
    |||    
T  45008156 aca 45008158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 502 - 540
Target Start/End: Complemental strand, 1347704 - 1347666
Alignment:
Q  502 gaaggtccaaaatcaaagaatcttcaaattacaaggttg 540  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  1347704 gaaggtccaaaatcaaagaatattcaaattacaaggttg 1347666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 499 - 553
Target Start/End: Complemental strand, 17030645 - 17030593
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    ||||||||||||||| |||| |||||||||||||||||||||| |||||||||||    
T  17030645 catgaaggtccaaaaccaaa-aatcttcaaattacaaggttgg-aatctaaacaa 17030593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 48689330 - 48689368
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  48689330 catgaaggtccaaaatcaaaaaatcttcaaattacaagg 48689368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 445 - 513
Target Start/End: Original strand, 20275533 - 20275601
Alignment:
Q  445 aaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaa 513  Q
    ||||||||| |||||| |   ||||||| |||||||||||||| ||||||||| ||| |||||||||||    
T  20275533 aaattctcttaaattacagttggcaaaaataccttaaattttgaaatttgatgtcataaaggtccaaaa 20275601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 300425 - 300463
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  300425 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 300463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 5572212 - 5572249
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  5572212 catgaaggtccaaaatcaaa-aatcttcaaattacaagg 5572249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 13041480 - 13041442
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  13041480 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 13041442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 13049557 - 13049519
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  13049557 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 13049519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 553
Target Start/End: Original strand, 18359450 - 18359503
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    |||||||||| |||  ||||||||||| ||||||||||||| |||||||||||||    
T  18359450 catgaaggtctaaatccaaagaatctttaaattacaaggtt-gaaatctaaacaa 18359503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 25387703 - 25387665
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  25387703 catgaaggtctaaaatcaaagaatcttgaaattacaagg 25387665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 26770038 - 26770000
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  26770038 catgaaggtccaaaagcaaaaaatcttcaaattacaagg 26770000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 52839416 - 52839378
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  52839416 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 52839378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 418 - 460
Target Start/End: Complemental strand, 54571334 - 54571292
Alignment:
Q  418 atcgatgatatagcagggggtaaatagaaattctctcaaatta 460  Q
    ||||||||||||||||||||||||  |||||| ||||||||||    
T  54571334 atcgatgatatagcagggggtaaacggaaattttctcaaatta 54571292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 497
Target Start/End: Complemental strand, 22438776 - 22438731
Alignment:
Q  452 ctcaaattataaggggcaaaagtaccttaaattttgtaatttgatg 497  Q
    ||||||||||| ||||| |||||||  |||||||||||||||||||    
T  22438776 ctcaaattatagggggcgaaagtacaataaattttgtaatttgatg 22438731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 1e-43; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 384 - 553
Target Start/End: Original strand, 42223156 - 42223325
Alignment:
Q  384 aaaatcaataatatgggaggg-ggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaa 482  Q
    |||||| || |||||| |||| ||||||| ||||||| ||||||||  |||||||||||  |||||||| |||||||| ||||||| |||||||||||||    
T  42223156 aaaatcgatgatatggtagggtggtaaaccgaaatattgatgatatgtcagggggtaaaccgaaattctttcaaattacaaggggcgaaagtaccttaaa 42223255  T
Q  483 ttttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    ||||||||||||||| ||||||||| |||||||||| ||||||||||||||| |||||| |||||||||||    
T  42223256 ttttgtaatttgatgccatgaaggttcaaaatcaaaaaatcttcaaattacagggttgg-aatctaaacaa 42223325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 418 - 553
Target Start/End: Original strand, 16590583 - 16590716
Alignment:
Q  418 atcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 517  Q
    ||||||||||||| ||||||||||| ||||||||||||||| ||| | ||| |||||||||||||||||||||||||||| ||||||||||||||| |||    
T  16590583 atcgatgatatagtagggggtaaatcgaaattctctcaaat-ataggaggcgaaagtaccttaaattttgtaatttgatgtcatgaaggtccaaaaccaa 16590681  T
Q  518 agaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    | |||||||||||||| ||||| ||||| |||||||    
T  16590682 ataatcttcaaattac-aggtttgaaatataaacaa 16590716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 394 - 553
Target Start/End: Original strand, 41906132 - 41906289
Alignment:
Q  394 atatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaattt 493  Q
    |||||| |||||||||||||||||||| ||||||| ||||||||||||  ||||||||||||  ||| ||||  | ||||||||| ||||||||||||||    
T  41906132 atatggaagggggtaaactgaaatatcaatgatatggcagggggtaaactgaaattctctcatgttacaaggt-cgaaagtacctaaaattttgtaattt 41906230  T
Q  494 gatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    |||| ||| |||||||||||| ||| |||||||||||||||||||| ||||| |||||||    
T  41906231 gatgccataaaggtccaaaataaaaaaatcttcaaattacaaggtt-gaaatttaaacaa 41906289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 418 - 553
Target Start/End: Original strand, 35791130 - 35791264
Alignment:
Q  418 atcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 517  Q
    ||||||||||| ||||||||||||  ||||| ||||||||||| || |||| |||||||||||||||||||||||||||| |||||||||  ||||||||    
T  35791130 atcgatgatatggcagggggtaaaccgaaatactctcaaattacaaagggcgaaagtaccttaaattttgtaatttgatggcatgaaggtttaaaatcaa 35791229  T
Q  518 agaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    |||||||| ||||||||  ||| |||||||||||||    
T  35791230 agaatctttaaattacagagtt-gaaatctaaacaa 35791264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 418 - 537
Target Start/End: Original strand, 31989489 - 31989607
Alignment:
Q  418 atcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 517  Q
    ||||||||||| ||||||| ||||  ||||||  |||| |||||| ||||| |||||||| ||||||||||||||||||| ||||||||||||||| |||    
T  31989489 atcgatgatatggcagggg-taaactgaaatttgctcatattatagggggcgaaagtaccataaattttgtaatttgatgccatgaaggtccaaaaccaa 31989587  T
Q  518 agaatcttcaaattacaagg 537  Q
    ||||||||||||||||||||    
T  31989588 agaatcttcaaattacaagg 31989607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 421 - 553
Target Start/End: Complemental strand, 11478184 - 11478052
Alignment:
Q  421 gatgatatagcagg-gggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaag 519  Q
    |||||||| ||||| |||||||  |||||| || ||||||| ||| ||| ||||||||||||||||||||||||||||  |||||||||||||| |||||    
T  11478184 gatgatatggcaggagggtaaaccgaaattatcccaaattacaagaggcgaaagtaccttaaattttgtaatttgatgctatgaaggtccaaaaccaaag 11478085  T
Q  520 aatcttcaaattacaaggttggaaatctaaacaa 553  Q
    ||| ||||||||||| |||| |||||||||||||    
T  11478084 aattttcaaattacagggtt-gaaatctaaacaa 11478052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 445 - 617
Target Start/End: Original strand, 11915181 - 11915352
Alignment:
Q  445 aaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaa 544  Q
    |||||||||||||||| | ||||| ||||| |||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| |  ||| ||||    
T  11915181 aaattctctcaaattacacggggcgaaagtgccttaaattttgtaatttgatgtcatgaaggtccaaaaccaaaaaatcttcaaattatagagtt-gaaa 11915279  T
Q  545 tctaaacaannnnnnnnacaggggataaaccgaaaatcgttaatattactggagattaaacatatattaaccc 617  Q
    | |||||||        |||||   |||||||||||| | ||||||||| || |  |||||||||||||||||    
T  11915280 tttaaacaatattttttacaggaagtaaaccgaaaattgctaatattacaggggggtaaacatatattaaccc 11915352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 418 - 534
Target Start/End: Original strand, 31397395 - 31397510
Alignment:
Q  418 atcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 517  Q
    |||||| |||| ||||||||||||| ||||| | ||||||||| ||||||| |||||| | ||||||||| ||||||| | ||||||||||||||| |||    
T  31397395 atcgataatatggcagggggtaaattgaaat-cgctcaaattacaaggggcgaaagtatcataaattttgaaatttgacgtcatgaaggtccaaaaccaa 31397493  T
Q  518 agaatcttcaaattaca 534  Q
    | |||||||||||||||    
T  31397494 ataatcttcaaattaca 31397510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 418 - 537
Target Start/End: Original strand, 31377684 - 31377803
Alignment:
Q  418 atcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 517  Q
    ||||||||||| ||||||| ||||   |||||  ||||||||| | | ||| |||||||  ||||||||||||| ||||| ||||||||||||||| |||    
T  31377684 atcgatgatatggcaggggttaaaccaaaatttgctcaaattacaggaggcgaaagtactataaattttgtaatatgatgccatgaaggtccaaaaccaa 31377783  T
Q  518 agaatcttcaaattacaagg 537  Q
    | ||||||||||||||||||    
T  31377784 ataatcttcaaattacaagg 31377803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 435 - 553
Target Start/End: Complemental strand, 41567432 - 41567315
Alignment:
Q  435 gggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattaca 534  Q
    ||||||| | ||| || ||||||||| | | ||| |||||||||||||||||| ||||||||  ||| ||| ||||||||| || ||| |||||||||||    
T  41567432 gggtaaacaaaaaatcgctcaaattacatgaggcgaaagtaccttaaattttgaaatttgataccataaagatccaaaatcgaataattttcaaattaca 41567333  T
Q  535 aggttggaaatctaaacaa 553  Q
    ||||| |||||||||||||    
T  41567332 aggtt-gaaatctaaacaa 41567315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 455 - 526
Target Start/End: Complemental strand, 29878882 - 29878811
Alignment:
Q  455 aaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttc 526  Q
    |||||| ||||| | ||| |||| ||||||||||||||||||| |||||| |||||||||||||||||||||    
T  29878882 aaattacaagggacgaaaataccataaattttgtaatttgatgccatgaatgtccaaaatcaaagaatcttc 29878811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 437 - 497
Target Start/End: Original strand, 23381343 - 23381403
Alignment:
Q  437 gtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatg 497  Q
    |||||| ||||||  ||||||||| ||||||| |||||||| |||||||||||||||||||    
T  23381343 gtaaatcgaaatttactcaaattacaaggggcgaaagtaccataaattttgtaatttgatg 23381403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 422 - 493
Target Start/End: Original strand, 13315985 - 13316055
Alignment:
Q  422 atgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaattt 493  Q
    ||||||| ||||||||||||| |||||||| ||||||||  | |||| ||||||||| ||||||||||||||    
T  13315985 atgatatggcagggggtaaatcgaaattctttcaaatta-catgggcgaaagtacctgaaattttgtaattt 13316055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 17188769 - 17188731
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  17188769 catgaaggtccaaaatcaaaaaatcttcaaattacaagg 17188731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 499 - 536
Target Start/End: Original strand, 15580626 - 15580663
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaag 536  Q
    |||||||||||||||||||| |||||||||||||||||    
T  15580626 catgaaggtccaaaatcaaaaaatcttcaaattacaag 15580663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 436 - 535
Target Start/End: Original strand, 959662 - 959761
Alignment:
Q  436 ggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaa 535  Q
    ||||||| ||||||  ||||||||  |||| || |||||||||||||||||  ||||| ||| ||| ||||| |||||| ||| |||||| | |||||||    
T  959662 ggtaaattgaaatttgctcaaatttcaaggagcgaaagtaccttaaattttaaaatttaatgtcataaaggttcaaaattaaataatctttacattacaa 959761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 539
Target Start/End: Original strand, 18155450 - 18155489
Alignment:
Q  500 atgaaggtccaaaatcaaagaatcttcaaattacaaggtt 539  Q
    |||||||||||||| |||||||||||| ||||||||||||    
T  18155450 atgaaggtccaaaaccaaagaatcttcgaattacaaggtt 18155489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 15543832 - 15543794
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  15543832 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 15543794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 16139057 - 16139095
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  16139057 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 16139095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 16204426 - 16204388
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  16204426 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 16204388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 19272920 - 19272958
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  19272920 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 19272958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 25293453 - 25293416
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  25293453 catgaaggtccaaaatcaaa-aatcttcaaattacaagg 25293416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 30497407 - 30497445
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  30497407 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 30497445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 553
Target Start/End: Complemental strand, 35791112 - 35791059
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    ||||||||||||||| || ||||| ||||||||||| |||||| |||||||||||    
T  35791112 catgaaggtccaaaaacagagaatattcaaattacagggttgg-aatctaaacaa 35791059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 38128019 - 38128057
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  38128019 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 38128057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 531
Target Start/End: Complemental strand, 24486657 - 24486596
Alignment:
Q  470 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaatt 531  Q
    |||||| ||||||||||| ||||||||| |||||| ||||||||  ||| ||| ||||||||    
T  24486657 aaagtatcttaaattttgaaatttgatgtcatgaaagtccaaaactaaacaattttcaaatt 24486596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 543
Target Start/End: Original strand, 30602594 - 30602635
Alignment:
Q  502 gaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 543  Q
    ||||||| |||| ||||||||||| |||||||||||||||||    
T  30602594 gaaggtctaaaagcaaagaatctttaaattacaaggttggaa 30602635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 2e-42; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 394 - 549
Target Start/End: Complemental strand, 9689446 - 9689291
Alignment:
Q  394 atatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaattt 493  Q
    |||||| ||||||||||| ||||||| |||||||| | ||||||||||  ||||||||||||||||| ||||| ||||||||||||||||||| ||||||    
T  9689446 atatggtagggggtaaaccgaaatattgatgatatggtagggggtaaaccgaaattctctcaaattacaagggacaaaagtaccttaaattttataattt 9689347  T
Q  494 gatgacatgaaggtccaaaatc-aaagaatcttcaaattacaaggttggaaatctaa 549  Q
    |||| ||||||||||||||||| ||| ||||||||||||||| |||| |||||||||    
T  9689346 gatgtcatgaaggtccaaaatcaaaaaaatcttcaaattacagggtt-gaaatctaa 9689291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 394 - 540
Target Start/End: Original strand, 43393849 - 43393996
Alignment:
Q  394 atatgggaggggg-taaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatt 492  Q
    |||||| |||||| |||||||||||||||||| ||||||||||||||||  ||||||||||||  ||| ||||| | |||||||||||||||||||||||    
T  43393849 atatggaagggggataaactgaaatatcgatggtatagcagggggtaaactgaaattctctcacgttacaagggtcgaaagtaccttaaattttgtaatt 43393948  T
Q  493 tgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttg 540  Q
    ||||| |||||||||||||||| ||| ||||||||||||||| |||||    
T  43393949 tgatgccatgaaggtccaaaataaaaaaatcttcaaattacagggttg 43393996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 384 - 553
Target Start/End: Original strand, 1853233 - 1853398
Alignment:
Q  384 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaat 483  Q
    |||||| || |||||  ||||||||||| |||||||||||||||  |||||||||||   ||||||||||||||||  | ||| | ||||||||||||||    
T  1853233 aaaatcgatgatatgacagggggtaaac-gaaatatcgatgataaggcagggggtaac--gaaattctctcaaatttcaggggacgaaagtaccttaaat 1853329  T
Q  484 tttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    |||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  1853330 tttgaaatttgatgccatgaaggtccaaaatcaaaaaatcttcaaattacaaggttgg-aatctaaacaa 1853398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 384 - 553
Target Start/End: Complemental strand, 42957593 - 42957424
Alignment:
Q  384 aaaatcaataatatgggagggg-gtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaa 482  Q
    ||||||||| |||| | ||||| ||||  ||||||||||| |||||  ||| |||||||| ||||||||||||||||| ||||| | |||||||||||||    
T  42957593 aaaatcaatgatatagcaggggagtaacatgaaatatcgaggatatgacagagggtaaatcgaaattctctcaaattacaagggacgaaagtaccttaaa 42957494  T
Q  483 ttttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    ||||||||||||||| |||||||||||||||||||| ||  ||||||||||| |||| | |||||||||||    
T  42957493 ttttgtaatttgatgtcatgaaggtccaaaatcaaaaaaaattcaaattacagggttag-aatctaaacaa 42957424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 403 - 553
Target Start/End: Complemental strand, 3092441 - 3092292
Alignment:
Q  403 ggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatg 502  Q
    ||||||||  |||||||| ||||||| | ||||||||||  | ||||||||||||||||| ||||  ||||||||||||||||| ||||||||||  |||    
T  3092441 ggggtaaatcgaaatatcaatgatatggaagggggtaaaccgtaattctctcaaattatagggggtgaaagtaccttaaattttataatttgatgtaatg 3092342  T
Q  503 aaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    |||||  ||||||||| |||||| ||||||||||||| |||||||||||||    
T  3092341 aaggtttaaaatcaaaaaatctttaaattacaaggtt-gaaatctaaacaa 3092292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 394 - 543
Target Start/End: Original strand, 15635228 - 15635378
Alignment:
Q  394 atatgggagggggtaaactgaaatatcgatgatatagcaggggg-taaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatt 492  Q
    |||||| | ||||||||| |||||||||||||||| | |||||| ||||  ||||||||||||| ||||| ||||| |||||||| ||||||||| ||||    
T  15635228 atatggcatggggtaaaccgaaatatcgatgatatggtaggggggtaaaacgaaattctctcaagttatagggggcgaaagtaccataaattttgaaatt 15635327  T
Q  493 tgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 543  Q
    ||||| ||| ||||| ||||||||||  ||||||||||||||  |||||||    
T  15635328 tgatggcataaaggttcaaaatcaaaatatcttcaaattacagagttggaa 15635378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 445 - 598
Target Start/End: Complemental strand, 2936294 - 2936144
Alignment:
Q  445 aaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaa 544  Q
    |||||||||||||||| | ||||| |||||||||||||||||||||||||||| |||||||||| |||| |||| ||| ||||||||||| |||||| ||    
T  2936294 aaattctctcaaattacagggggcgaaagtaccttaaattttgtaatttgatgtcatgaaggtctaaaaccaaataattttcaaattacatggttgg-aa 2936196  T
Q  545 tctaaacaannnnnnnnacaggggataaaccgaaaatcgttaatattactggag 598  Q
    ||||||||         |||||| ||||||||||||||| ||||||||| ||||    
T  2936195 tctaaaca--tttttttacagggcataaaccgaaaatcgctaatattacaggag 2936144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 418 - 543
Target Start/End: Complemental strand, 45687822 - 45687698
Alignment:
Q  418 atcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 517  Q
    |||||||||||  |||||| ||||   |||||||||||||||||| ||||  ||||||||||||||||| |||||||||| ||||||||| | |||||||    
T  45687822 atcgatgatatgacaggggataaaccaaaattctctcaaattatagggggtgaaagtaccttaaattttataatttgatgccatgaaggt-ctaaatcaa 45687724  T
Q  518 agaatcttcaaattacaaggttggaa 543  Q
    ||||||||||||||||| ||||||||    
T  45687723 agaatcttcaaattacagggttggaa 45687698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 403 - 514
Target Start/End: Original strand, 11625113 - 11625224
Alignment:
Q  403 ggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatg 502  Q
    ||||||||| |||||||| ||||||| | ||||||||||  ||||||||| |||| || ||||||| ||||||||||||||| |||||||||||| ||||    
T  11625113 ggggtaaaccgaaatatcaatgatatggtagggggtaaaccgaaattctcacaaactacaaggggcgaaagtaccttaaattatgtaatttgatgtcatg 11625212  T
Q  503 aaggtccaaaat 514  Q
    ||||||||||||    
T  11625213 aaggtccaaaat 11625224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 445 - 553
Target Start/End: Original strand, 24812925 - 24813032
Alignment:
Q  445 aaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaa 544  Q
    ||||||| |||||||| |||||   |||||||||||||||||||||||||||| | | |||||| |||| |||||||||||||||||||| |||| ||||    
T  24812925 aaattctttcaaattacaagggatgaaagtaccttaaattttgtaatttgatgccttaaaggtctaaaaccaaagaatcttcaaattacagggtt-gaaa 24813023  T
Q  545 tctaaacaa 553  Q
    |||||||||    
T  24813024 tctaaacaa 24813032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 418 - 543
Target Start/End: Original strand, 15011935 - 15012060
Alignment:
Q  418 atcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 517  Q
    ||||||||||| |||| |||||||  |||||||||||||||||    ||  |||| |||||| ||||||||||||||||| | |||| || |||||||||    
T  15011935 atcgatgatatggcagagggtaaaccgaaattctctcaaattaccgaggataaaaataccttgaattttgtaatttgatgccgtgaatgttcaaaatcaa 15012034  T
Q  518 agaatcttcaaattacaaggttggaa 543  Q
    ||||||||||||||||| | ||||||    
T  15012035 agaatcttcaaattacaggattggaa 15012060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 456 - 553
Target Start/End: Original strand, 19377094 - 19377191
Alignment:
Q  456 aattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    ||||| ||||||| |||||||||||||||||||||||||| | |||||||||||||||| |||  |||||||||||||| || | | |||||||||||    
T  19377094 aattacaaggggcgaaagtaccttaaattttgtaatttgacgccatgaaggtccaaaataaaaatatcttcaaattacaggggttggaatctaaacaa 19377191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 418 - 553
Target Start/End: Complemental strand, 27082728 - 27082594
Alignment:
Q  418 atcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 517  Q
    |||||| |||| ||||||||||||   ||||| |||||||||| | ||||| ||||||||||||| |||||||||||||  ||| || ||| |||| |||    
T  27082728 atcgataatatggcagggggtaaaccaaaattatctcaaattacagggggcgaaagtaccttaaactttgtaatttgatttcataaatgtctaaaaccaa 27082629  T
Q  518 agaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    ||||||||||| |||||  ||||| |||||||||||    
T  27082628 agaatcttcaagttacagtgttgg-aatctaaacaa 27082594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 418 - 553
Target Start/End: Original strand, 27195573 - 27195707
Alignment:
Q  418 atcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 517  Q
    |||||| |||| ||||||||||||   ||||| |||||||||| | ||||| ||||||||||||| |||||||||||||  ||| || ||| |||| |||    
T  27195573 atcgataatatggcagggggtaaaccaaaattatctcaaattacagggggcgaaagtaccttaaactttgtaatttgatttcataaatgtctaaaaccaa 27195672  T
Q  518 agaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    ||||||||||| |||||  ||||| |||||||||||    
T  27195673 agaatcttcaagttacagtgttgg-aatctaaacaa 27195707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 444 - 553
Target Start/End: Complemental strand, 25601906 - 25601798
Alignment:
Q  444 gaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 543  Q
    |||||||||| |||||| | ||||| ||||||| |||||||||||||||||||  |||||||||   ||  |||| |||||||||||||||||||||| |    
T  25601906 gaaattctctaaaattacagggggcgaaagtacattaaattttgtaatttgatatcatgaaggttttaagccaaaaaatcttcaaattacaaggttgg-a 25601808  T
Q  544 atctaaacaa 553  Q
    ||||||||||    
T  25601807 atctaaacaa 25601798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 445 - 549
Target Start/End: Complemental strand, 10394574 - 10394471
Alignment:
Q  445 aaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaa 544  Q
    ||||||||||||||||||| |||   |||| ||||||||||| ||||||||||  |||||| | ||||| ||||||||||||||||||||| ||| ||||    
T  10394574 aaattctctcaaattataaagggtggaagtgccttaaattttataatttgatgctatgaagatacaaaaccaaagaatcttcaaattacaaagtt-gaaa 10394476  T
Q  545 tctaa 549  Q
    |||||    
T  10394475 tctaa 10394471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 469 - 537
Target Start/End: Original strand, 28696661 - 28696729
Alignment:
Q  469 aaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||| ||| ||||||||||||||| | |||||||||||||||||||||| || |||||||||||    
T  28696661 aaaagtaccataagttttgtaatttgatgtcttgaaggtccaaaatcaaagaatattaaaattacaagg 28696729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 434 - 532
Target Start/End: Original strand, 27484941 - 27485040
Alignment:
Q  434 ggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaat-caaagaatcttcaaatta 532  Q
    ||||||||  |||||||||||||||||||  ||| ||||||| |||||||||| |||||| ||| ||||||| ||||||||  ||| |||||||||||||    
T  27484941 ggggtaaactgaaattctctcaaattatagagggtaaaagtatcttaaattttttaatttaatgccatgaagatccaaaataaaaaaaatcttcaaatta 27485040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 445 - 553
Target Start/End: Complemental strand, 14675681 - 14675581
Alignment:
Q  445 aaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaa 544  Q
    |||||||||||||||| | ||||||||||||| ||||||||||  ||       |||||| |||||||||||||||||||||||||||||| ||| ||||    
T  14675681 aaattctctcaaattacagggggcaaaagtactttaaattttgatat-------catgaaagtccaaaatcaaagaatcttcaaattacaatgtt-gaaa 14675590  T
Q  545 tctaaacaa 553  Q
    ||| |||||    
T  14675589 tcttaacaa 14675581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 470 - 532
Target Start/End: Complemental strand, 22859404 - 22859342
Alignment:
Q  470 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaatta 532  Q
    |||||||| |||||||||||| |||| | ||||||| ||||||| |||| |||||||||||||    
T  22859404 aaagtaccataaattttgtaacttgaagccatgaagatccaaaaccaaaaaatcttcaaatta 22859342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 500 - 553
Target Start/End: Original strand, 2936339 - 2936391
Alignment:
Q  500 atgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    ||||||||| |||| |||||||||||||||||||| |||| |||||||||||||    
T  2936339 atgaaggtcgaaaaccaaagaatcttcaaattacatggtt-gaaatctaaacaa 2936391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 467
Target Start/End: Original strand, 18268280 - 18268329
Alignment:
Q  418 atcgatgatatagcagggggtaaatagaaattctctcaaattataagggg 467  Q
    ||||||||||||||||||||||||  ||||||| |||||||||| |||||    
T  18268280 atcgatgatatagcagggggtaaaccgaaattcgctcaaattatcagggg 18268329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 431 - 472
Target Start/End: Complemental strand, 26876658 - 26876617
Alignment:
Q  431 cagggggtaaatagaaattctctcaaattataaggggcaaaa 472  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  26876658 cagggggtaaattgaaattttctcaaattataaggggcaaaa 26876617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 2300938 - 2300901
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  2300938 catgaaggtccaaaatcaa-gaatcttcaaattacaagg 2300901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 553
Target Start/End: Complemental strand, 8391079 - 8391027
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    |||||||||||||||||||| ||||| |||||||||||| |||||| ||||||||    
T  8391079 catgaaggtccaaaatcaaa-aatctacaaattacaaggatggaaa-ctaaacaa 8391027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 17051933 - 17051895
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  17051933 catgaaggtccaaaatcaaaaaatattcaaattacaagg 17051895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 21022507 - 21022469
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  21022507 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 21022469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 326 - 380
Target Start/End: Complemental strand, 25584043 - 25583989
Alignment:
Q  326 atattactcacttcatactctacagtgaatcgctcactttagaagagcctgatcc 380  Q
    ||||||||||||| | |||||| ||||| | |||||||||||||||||| |||||    
T  25584043 atattactcactttacactctaaagtgagttgctcactttagaagagccggatcc 25583989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 553
Target Start/End: Complemental strand, 27484872 - 27484820
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    ||||||| |||||||||||| ||||||||||||||| |||| |||||||||||||    
T  27484872 catgaagatccaaaatcaaa-aatcttcaaattacatggtt-gaaatctaaacaa 27484820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 453 - 535
Target Start/End: Original strand, 28543319 - 28543400
Alignment:
Q  453 tcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaa 535  Q
    ||||||||||| || |||||||||  ||||||||||||||||||| | |  |||||||||| ||||| |  ||||||||||||    
T  28543319 tcaaattataaaggacaaaagtactataaattttgtaatttgatgtc-ttcaggtccaaaaccaaaggactttcaaattacaa 28543400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 35158299 - 35158262
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  35158299 catgaaggtccaaaatcaaa-aatcttcaaattacaagg 35158262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 499 - 552
Target Start/End: Complemental strand, 15011917 - 15011865
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaaca 552  Q
    |||| |||| ||||| |||||||||||||||||||| |||| ||||||||||||    
T  15011917 catgcaggttcaaaaccaaagaatcttcaaattacagggtt-gaaatctaaaca 15011865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 553
Target Start/End: Original strand, 25898629 - 25898713
Alignment:
Q  468 caaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    |||||||| |||||| |||| ||||||||  |||   |||  |||||| |||||||||||||||||||||||  ||||||||||||    
T  25898629 caaaagtatcttaaagtttgaaatttgatatcatatgggtttaaaatcgaagaatcttcaaattacaaggtt-aaaatctaaacaa 25898713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 2e-42; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 394 - 549
Target Start/End: Complemental strand, 13555823 - 13555668
Alignment:
Q  394 atatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaattt 493  Q
    |||||| ||||||||||| ||||||| |||||||| | ||||||||||  ||||||||||||||||| ||||| ||||||||||||||||||| ||||||    
T  13555823 atatggtagggggtaaaccgaaatattgatgatatggtagggggtaaaccgaaattctctcaaattacaagggacaaaagtaccttaaattttataattt 13555724  T
Q  494 gatgacatgaaggtccaaaatc-aaagaatcttcaaattacaaggttggaaatctaa 549  Q
    |||| ||||||||||||||||| ||| ||||||||||||||| |||| |||||||||    
T  13555723 gatgtcatgaaggtccaaaatcaaaaaaatcttcaaattacagggtt-gaaatctaa 13555668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 384 - 553
Target Start/End: Original strand, 5283732 - 5283900
Alignment:
Q  384 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaat 483  Q
    |||||| || |||||| || |||||||  |||||||||||||||| ||||||||||||  |||||||  |||||||| ||||||||| ||||||||||||    
T  5283732 aaaatcgatgatatggtagagggtaaatcgaaatatcgatgatattgcagggggtaaaccgaaattccttcaaattacaaggggcaagagtaccttaaat 5283831  T
Q  484 tttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    ||| |||||||||| ||||||||| |||||||||| ||||||||||||||| | |||| |||||||||||    
T  5283832 tttttaatttgatgccatgaaggttcaaaatcaaaaaatcttcaaattacaggattgg-aatctaaacaa 5283900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 384 - 553
Target Start/End: Original strand, 8810010 - 8810178
Alignment:
Q  384 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaat 483  Q
    ||||||||| |||||  ||||||||| ||||||||||||||| ||   ||||||||||  |||||| |||||||||| | ||| | ||||||||||||||    
T  8810010 aaaatcaatgatatgacagggggtaacctgaaatatcgatgacatgatagggggtaaaccgaaattttctcaaattacacgggacgaaagtaccttaaat 8810109  T
Q  484 tttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    ||| |||||||||| |||||||||||||||| ||| |||||||||||||||||||| ||||||| |||||    
T  8810110 tttataatttgatgtcatgaaggtccaaaataaaaaaatcttcaaattacaaggtt-gaaatcttaacaa 8810178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 404 - 543
Target Start/End: Original strand, 42161367 - 42161507
Alignment:
Q  404 gggtaaactgaaatatcgatgatatagcagg-gggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatg 502  Q
    ||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||| || |||||||||||||||||||||||||||| | |     
T  42161367 gggtaaactgaaatatcgatgatatggcaggagggtaaatcgaaattctctcaaattacaaggagcgaaagtaccttaaattttgtaatttgatgccttc 42161466  T
Q  503 aaggtccaaaatcaaagaatcttcaaattacaaggttggaa 543  Q
    |||||||||||| |||  |||||||||||||| | ||||||    
T  42161467 aaggtccaaaattaaaagatcttcaaattacaggattggaa 42161507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 421 - 553
Target Start/End: Complemental strand, 49277858 - 49277727
Alignment:
Q  421 gatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaaga 520  Q
    |||||||| ||||||||||||| ||||||||| ||||||| |  ||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |    
T  49277858 gatgatatcgcagggggtaaattgaaattctcgcaaattacagagggcaaaagtaccttaaattttgtaatttgatgccatgaaggtccaaaaccaaata 49277759  T
Q  521 atcttcaaattacaaggttggaaatctaaacaa 553  Q
    || ||||||||||| |||||| |||||||||||    
T  49277758 attttcaaattacacggttgg-aatctaaacaa 49277727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 421 - 539
Target Start/End: Original strand, 49533201 - 49533319
Alignment:
Q  421 gatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaaga 520  Q
    |||||||||| || || ||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||| |||| |    
T  49533201 gatgatataggagaggataaatcgaaattctctcaaattataaggggcaaaaatacgttaaattttgtaatttgatgtcatgaaggtccaaaaccaaata 49533300  T
Q  521 atcttcaaattacaaggtt 539  Q
    |||||||||||| ||||||    
T  49533301 atcttcaaattataaggtt 49533319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 444 - 553
Target Start/End: Complemental strand, 16876045 - 16875937
Alignment:
Q  444 gaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 543  Q
    ||||||||||||||||| | ||| ||||| |||||||||||||||||||||||| ||| |||||| |||||||||||||||||||| ||||||||| | |    
T  16876045 gaaattctctcaaattacaggggacaaaaataccttaaattttgtaatttgatgccataaaggtcgaaaatcaaagaatcttcaaactacaaggtt-gta 16875947  T
Q  544 atctaaacaa 553  Q
    ||||||||||    
T  16875946 atctaaacaa 16875937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 418 - 553
Target Start/End: Complemental strand, 9780528 - 9780392
Alignment:
Q  418 atcgatgatatagcag--ggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatc 515  Q
    ||||||||||| ||||  ||||||||  |||||| |||||||||| | |||   ||||||||||||||||| |||||||||| |||| ||||| ||||||    
T  9780528 atcgatgatatggcagaaggggtaaaccgaaattatctcaaattacaggggatgaaagtaccttaaattttttaatttgatgccatgtaggtcgaaaatc 9780429  T
Q  516 aaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  9780428 aaagaatcttcaaattacagggttgg-aatctaaacaa 9780392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 444 - 553
Target Start/End: Original strand, 16734243 - 16734350
Alignment:
Q  444 gaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 543  Q
    ||||||||||||||||| | || || ||| |||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||| ||||| |||    
T  16734243 gaaattctctcaaattacagggtgcgaaaataccttaaattttgtaattttatgccatgaaggtctaaaatcaaagaatcttcaaattac-aggtt-gaa 16734340  T
Q  544 atctaaacaa 553  Q
    ||||||||||    
T  16734341 atctaaacaa 16734350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 453 - 553
Target Start/End: Complemental strand, 8678989 - 8678889
Alignment:
Q  453 tcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaat-caaagaatcttcaaattacaaggttggaaatctaaac 551  Q
    |||||||| ||| ||| |||||||||||||||||||||||||||| ||||||||||||||||  ||| |||||||||||||||||||| | |||||||||    
T  8678989 tcaaattacaagaggcgaaagtaccttaaattttgtaatttgatgccatgaaggtccaaaataaaaaaaatcttcaaattacaaggtttg-aatctaaac 8678891  T
Q  552 aa 553  Q
    ||    
T  8678890 aa 8678889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 470 - 532
Target Start/End: Original strand, 25786326 - 25786388
Alignment:
Q  470 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaatta 532  Q
    ||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  25786326 aaagtaccttaaaatttgtaatttgatgccatgaaggttcaaaatcaaagaatcttcaaatta 25786388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 444 - 552
Target Start/End: Original strand, 21744891 - 21744998
Alignment:
Q  444 gaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 543  Q
    ||||||||||||||||| |||  || |||| |||| |||||||||||||| | | ||||||  ||||||| |||||||| ||||||||||| |||||| |    
T  21744891 gaaattctctcaaattacaagaagcgaaagcacctaaaattttgtaatttcacgtcatgaaaatccaaaaccaaagaatattcaaattacatggttgg-a 21744989  T
Q  544 atctaaaca 552  Q
    |||||||||    
T  21744990 atctaaaca 21744998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 473 - 536
Target Start/End: Complemental strand, 29172681 - 29172618
Alignment:
Q  473 gtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaag 536  Q
    ||||||||||||||| || |||||| ||| |||||||||||| ||| ||||| |||||||||||    
T  29172681 gtaccttaaattttgaaacttgatgccattaaggtccaaaataaaaaaatctccaaattacaag 29172618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 16589236 - 16589274
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  16589236 catgaaggtccaaaatcaaaaaatcttcaaattacaagg 16589274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 489 - 530
Target Start/End: Original strand, 18509185 - 18509226
Alignment:
Q  489 aatttgatgacatgaaggtccaaaatcaaagaatcttcaaat 530  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    
T  18509185 aatttgatgtcatgaagatccaaaatcaaagaatcttcaaat 18509226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 502 - 543
Target Start/End: Original strand, 29172756 - 29172797
Alignment:
Q  502 gaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 543  Q
    |||||| ||||| |||||||||||||||||||||||||||||    
T  29172756 gaaggttcaaaaccaaagaatcttcaaattacaaggttggaa 29172797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 500 - 552
Target Start/End: Original strand, 49277880 - 49277931
Alignment:
Q  500 atgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaaca 552  Q
    |||||||| ||||| |||| |||||||||||||||||||||| ||||||||||    
T  49277880 atgaaggttcaaaaccaaataatcttcaaattacaaggttgg-aatctaaaca 49277931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 3652529 - 3652567
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  3652529 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 3652567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 553
Target Start/End: Original strand, 9780546 - 9780599
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    ||||||||||||||| |||| ||||||||||||||| |||| | |||||||||||    
T  9780546 catgaaggtccaaaaccaaataatcttcaaattacatggtt-gtaatctaaacaa 9780599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 27626925 - 27626963
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  27626925 catgaaggtccaaaagcaaaaaatcttcaaattacaagg 27626963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 29104419 - 29104457
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  29104419 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 29104457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 553
Target Start/End: Complemental strand, 29700616 - 29700563
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    |||||||||| ||||| ||||||||||||||| ||| |||||| |||||||||||    
T  29700616 catgaaggtcaaaaattaaagaatcttcaaataacagggttgg-aatctaaacaa 29700563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 36395452 - 36395414
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  36395452 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 36395414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 571 - 617
Target Start/End: Complemental strand, 44005757 - 44005712
Alignment:
Q  571 aaaccgaaaatcgttaatattactggagattaaacatatattaaccc 617  Q
    ||||||||||||| ||||||||||||||| |||||||| ||||||||    
T  44005757 aaaccgaaaatcgctaatattactggaga-taaacatacattaaccc 44005712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 49166902 - 49166940
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  49166902 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 49166940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 500 - 550
Target Start/End: Complemental strand, 49533180 - 49533131
Alignment:
Q  500 atgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaa 550  Q
    ||||| ||||||||| ||| |||||||||||||||||||| ||||||||||    
T  49533180 atgaaagtccaaaatgaaaaaatcttcaaattacaaggtt-gaaatctaaa 49533131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 553
Target Start/End: Original strand, 23091876 - 23091928
Alignment:
Q  500 atgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    |||||||| |||||  ||| |||||||||||||||||||||| |||||||||||    
T  23091876 atgaaggttcaaaactaaaaaatcttcaaattacaaggttgg-aatctaaacaa 23091928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 510 - 543
Target Start/End: Original strand, 37589620 - 37589653
Alignment:
Q  510 aaaatcaaagaatcttcaaattacaaggttggaa 543  Q
    ||||||||||||||||||||||||| ||||||||    
T  37589620 aaaatcaaagaatcttcaaattacatggttggaa 37589653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 86; Significance: 1e-40; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 405 - 550
Target Start/End: Original strand, 82300 - 82444
Alignment:
Q  405 ggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaa 504  Q
    |||||||  ||||||||||||||||||||||||||||  ||||||||||||||||| | ||||| |||||||||||||||||||||||||||  ||||||    
T  82300 ggtaaaccaaaatatcgatgatatagcagggggtaaaccgaaattctctcaaattacatggggcgaaagtaccttaaattttgtaatttgatatcatgaa 82399  T
Q  505 ggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaa 550  Q
    |||||||||||||| |||||| |||||| |||| | ||||||||||    
T  82400 ggtccaaaatcaaacaatctttaaatta-aagggttgaaatctaaa 82444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 5e-40; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 405 - 553
Target Start/End: Original strand, 9235440 - 9235587
Alignment:
Q  405 ggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaa 504  Q
    ||||||| ||||||||||||||||  || ||| ||||   ||||||| |||||||| ||||||| |||||||||||||||||||||||||||| ||||||    
T  9235440 ggtaaaccgaaatatcgatgatatgtcaagggttaaaccaaaattctttcaaattacaaggggcgaaagtaccttaaattttgtaatttgatgccatgaa 9235539  T
Q  505 ggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    |||||||||||||| ||||||||||||||| |||| |||||||||||||    
T  9235540 ggtccaaaatcaaaaaatcttcaaattacagggtt-gaaatctaaacaa 9235587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 404 - 617
Target Start/End: Original strand, 23288999 - 23289212
Alignment:
Q  404 gggtaaactgaaatatcgatgatatagcaggggg---taaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgaca 500  Q
    |||| ||| ||||||||||||||||  |||||||   |||| |||||||||||||||||| | ||| | |||||||||||||||||||||||||||| ||    
T  23288999 gggtgaaccgaaatatcgatgatatgacaggggggattaaacagaaattctctcaaattacaggggacgaaagtaccttaaattttgtaatttgatgcca 23289098  T
Q  501 tgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaannnnnnnnacaggggataaaccgaaaatcgttaatattactggagat 600  Q
    |||||||||||| | ||| ||||||||||||||| |||||| |||||||||||        |||||||||||||||||||||  ||||||||| || |      
T  23289099 tgaaggtccaaagttaaaaaatcttcaaattacagggttgg-aatctaaacaattttttttacaggggataaaccgaaaatcactaatattacagggg-- 23289195  T
Q  601 taaacatatattaaccc 617  Q
     ||||||||||||||||    
T  23289196 caaacatatattaaccc 23289212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 384 - 553
Target Start/End: Original strand, 5600247 - 5600413
Alignment:
Q  384 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaat 483  Q
    |||||| ||||||||| || |||||||||||| |||| |||||||||||||||| ||   |||||||||| |||||||| ||||| |||||||||| |||    
T  5600247 aaaatcgataatatggcagagggtaaactgaactatcaatgatatagcaggggg-aatccgaaattctctaaaattata-ggggcgaaagtaccttcaat 5600344  T
Q  484 tttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    ||||||| |||||| ||||||| |  ||||| ||| |||||||||||||||||||| ||||| |||||||    
T  5600345 tttgtaacttgatgccatgaagatttaaaataaaaaaatcttcaaattacaaggtt-gaaatttaaacaa 5600413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 384 - 553
Target Start/End: Complemental strand, 5640373 - 5640207
Alignment:
Q  384 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaat 483  Q
    |||||| ||||||||| || |||||||||||| |||| |||||||||||||||| ||   |||||||||| |||||||| ||||| |||||||||| |||    
T  5640373 aaaatcgataatatggcagagggtaaactgaactatcaatgatatagcaggggg-aatccgaaattctctaaaattata-ggggcgaaagtaccttcaat 5640276  T
Q  484 tttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    ||||||| |||||| ||||||| |  ||||| ||| |||||||||||||||||||| ||||| |||||||    
T  5640275 tttgtaacttgatgccatgaagatttaaaataaaaaaatcttcaaattacaaggtt-gaaatttaaacaa 5640207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 418 - 534
Target Start/End: Complemental strand, 13373373 - 13373258
Alignment:
Q  418 atcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 517  Q
    ||||||||||||||||||| || |  | ||||||||||||||| ||||||||||| |||||||||||||||||||||||| || |||||| ||||| |||    
T  13373373 atcgatgatatagcagggg-tacaccggaattctctcaaattacaaggggcaaaaataccttaaattttgtaatttgatgccaggaaggttcaaaaccaa 13373275  T
Q  518 agaatcttcaaattaca 534  Q
    |||||||||||||||||    
T  13373274 agaatcttcaaattaca 13373258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 384 - 514
Target Start/End: Original strand, 14698164 - 14698293
Alignment:
Q  384 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaat 483  Q
    ||||||||| |||||| | ||||||| |||||||||||||||||| |||||||| |||  |||||| |||||||||| || || ||||||||||||||||    
T  14698164 aaaatcaatgatatggcaaggggtaacctgaaatatcgatgatatggcagggggcaaactgaaattttctcaaattacaaaggacaaaagtaccttaaat 14698263  T
Q  484 tttgtaatttgatgacatgaaggtccaaaat 514  Q
    ||| ||| |||||| |||||||||| |||||    
T  14698264 tttataa-ttgatgccatgaaggtctaaaat 14698293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 421 - 535
Target Start/End: Complemental strand, 24375884 - 24375771
Alignment:
Q  421 gatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaaga 520  Q
    |||||||| ||||||||||||  ||||||  ||||||||| ||||| | |||||||| ||||||||||||||||||| ||||||||||||||| |||| |    
T  24375884 gatgatatggcagggggtaaactgaaatttgctcaaattacaagggacgaaagtaccataaattttgtaatttgatgccatgaaggtccaaaa-caaaaa 24375786  T
Q  521 atcttcaaattacaa 535  Q
    |||||||||||||||    
T  24375785 atcttcaaattacaa 24375771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 401 - 525
Target Start/End: Original strand, 24528887 - 24529011
Alignment:
Q  401 agggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgaca 500  Q
    |||||||||||||||||||||||||||| | ||||||||||  || ||||||| |||||| || |||| ||| ||| ||||||||| |||||||||| ||    
T  24528887 agggggtaaactgaaatatcgatgatatggtagggggtaaaccgagattctctaaaattacaaagggcgaaaatactttaaattttataatttgatgcca 24528986  T
Q  501 tgaaggtccaaaatcaaagaatctt 525  Q
     |||||| |||||| ||| ||||||    
T  24528987 cgaaggtacaaaataaaaaaatctt 24529011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 421 - 540
Target Start/End: Original strand, 23245660 - 23245779
Alignment:
Q  421 gatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaaga 520  Q
    |||||||| ||| ||||||||  |||||| |||||||||| | ||||| |||||||||||||||||  ||||| ||| |||  ||||||||||||||| |    
T  23245660 gatgatatggcaaggggtaaaacgaaattatctcaaattacatggggcgaaagtaccttaaattttaaaatttaatgccatataggtccaaaatcaaaaa 23245759  T
Q  521 atcttcaaattacaaggttg 540  Q
    |||||||||||||| |||||    
T  23245760 atcttcaaattacagggttg 23245779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 468 - 543
Target Start/End: Complemental strand, 11908549 - 11908474
Alignment:
Q  468 caaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 543  Q
    |||||||||||||||||||| ||||||||| ||||||||||| ||| || ||||||||||||||||| ||||||||    
T  11908549 caaaagtaccttaaattttgaaatttgatgccatgaaggtcctaaaccatagaatcttcaaattacatggttggaa 11908474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 452 - 543
Target Start/End: Complemental strand, 12719249 - 12719159
Alignment:
Q  452 ctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 543  Q
    ||||||||| ||||||| |||||| | | ||||||| ||||||||| ||||||||||||||| |||||||| |||||||||||||| |||||    
T  12719249 ctcaaattacaaggggcgaaagtatcatcaattttgaaatttgatgtcatgaaggtccaaaaccaaagaat-ttcaaattacaaggatggaa 12719159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 473 - 535
Target Start/End: Original strand, 8980741 - 8980803
Alignment:
Q  473 gtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaa 535  Q
    ||||| ||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||    
T  8980741 gtaccataaattttgtaatttgatgtcatgaaggtccaaaactaaagaatcttcaaattacaa 8980803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 471 - 553
Target Start/End: Complemental strand, 28786447 - 28786366
Alignment:
Q  471 aagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    |||||||||||| |||| || |||||| |||||||||||||||||||| ||||||| | ||||| |||||| |||||||||||    
T  28786447 aagtaccttaaagtttgaaaattgatgccatgaaggtccaaaatcaaataatcttctagttacagggttgg-aatctaaacaa 28786366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 499 - 553
Target Start/End: Original strand, 13980023 - 13980076
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    |||||||||||||||||||||||||||||||||||| |||| | |||||||||||    
T  13980023 catgaaggtccaaaatcaaagaatcttcaaattacagggttag-aatctaaacaa 13980076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 10761679 - 10761717
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  10761679 catgaaggtccaaaatcaaaaaatcttcaaattacaagg 10761717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 25653822 - 25653784
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  25653822 catgaaggtccaaaatcaaaaaatcttcaaattacaagg 25653784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 499 - 531
Target Start/End: Original strand, 28786519 - 28786551
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaatt 531  Q
    |||||||||||||||||||||||||||||||||    
T  28786519 catgaaggtccaaaatcaaagaatcttcaaatt 28786551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 500 - 536
Target Start/End: Original strand, 28999510 - 28999546
Alignment:
Q  500 atgaaggtccaaaatcaaagaatcttcaaattacaag 536  Q
    |||||||||| ||||||||||||||||||||||||||    
T  28999510 atgaaggtcccaaatcaaagaatcttcaaattacaag 28999546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 553
Target Start/End: Complemental strand, 24754670 - 24754628
Alignment:
Q  510 aaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    ||||||||||||||||||||||||| |||||| |||||||||||    
T  24754670 aaaatcaaagaatcttcaaattacatggttgg-aatctaaacaa 24754628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 9662311 - 9662273
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  9662311 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 9662273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 11830433 - 11830471
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  11830433 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 11830471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 12478831 - 12478869
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  12478831 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 12478869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 13558799 - 13558837
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  13558799 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 13558837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 32684679 - 32684641
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  32684679 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 32684641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 34845401 - 34845363
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  34845401 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 34845363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 41509497 - 41509459
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  41509497 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 41509459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 447 - 540
Target Start/End: Complemental strand, 11311390 - 11311297
Alignment:
Q  447 attctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttg 540  Q
    |||| ||||||||| ||||| ||||| ||| |||||||||  |||  |||| ||||||  | |||||||| | |||||||||||||||| ||||    
T  11311390 attccctcaaattacaagggacaaaaatacgttaaatttttaaatacgatgtcatgaaaattcaaaatcatataatcttcaaattacaaagttg 11311297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 536
Target Start/End: Complemental strand, 25057085 - 25057020
Alignment:
Q  471 aagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaag 536  Q
    ||||| |||| |||||| |||||||||  |||||| | |||||  |||||||||||||||||||||    
T  25057085 aagtatcttacattttgaaatttgatgtgatgaagattcaaaactaaagaatcttcaaattacaag 25057020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 499 - 536
Target Start/End: Original strand, 36637251 - 36637288
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaag 536  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  36637251 catgaaggtccaaaatcaaaaaatcttcatattacaag 36637288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 5e-40; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 384 - 532
Target Start/End: Complemental strand, 25060033 - 25059885
Alignment:
Q  384 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaat 483  Q
    ||||||||| |||||| ||||||||| ||||||||||||||||||  |||||||||||  ||||| ||||||||||| ||||||| ||| ||||||||||    
T  25060033 aaaatcaatgatatggcagggggtaacctgaaatatcgatgatatgacagggggtaaaccgaaatgctctcaaattacaaggggcgaaaataccttaaat 25059934  T
Q  484 tttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaatta 532  Q
    |||||||||||||| | |||||||||||||||||| ||| || ||||||    
T  25059933 tttgtaatttgatgtcttgaaggtccaaaatcaaaaaatatttaaatta 25059885  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 401 - 553
Target Start/End: Original strand, 5469440 - 5469592
Alignment:
Q  401 agggggtaaactgaaatatcgatgatatagcaggggg-taaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgac 499  Q
    ||||| |||| ||||||||| ||||||||| |||||| ||||  |||||||||||| |||| | ||||||||| |||||||||||||||| ||||||| |    
T  5469440 aggggataaattgaaatatcaatgatatagtaggggggtaaaccgaaattctctcatattacagggggcaaaaataccttaaattttgtagtttgatgcc 5469539  T
Q  500 atgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    ||||||||||||||||||| ||  |||||||||||||||||| |||||||||||    
T  5469540 atgaaggtccaaaatcaaaaaaaattcaaattacaaggttgg-aatctaaacaa 5469592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 445 - 553
Target Start/End: Original strand, 13437010 - 13437117
Alignment:
Q  445 aaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaa 544  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||| |||||| ||    
T  13437010 aaattctctcaaattacaaggggcgaaagtaccttaaattttgtaatttgatgtcatgaaggtccaaaatcaaaaaatcatcaaattacacggttgg-aa 13437108  T
Q  545 tctaaacaa 553  Q
    |||||||||    
T  13437109 tctaaacaa 13437117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 418 - 553
Target Start/End: Original strand, 33864186 - 33864321
Alignment:
Q  418 atcgatgatatagcag-ggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatca 516  Q
    ||||||||||| |||| ||||||||  |||||||||  |||||| | | ||| ||| |||||||||||||||||||||||| ||| ||||||||||| ||    
T  33864186 atcgatgatatcgcagaggggtaaaccgaaattctcgaaaattacaggaggcgaaaataccttaaattttgtaatttgatgccataaaggtccaaaacca 33864285  T
Q  517 aagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    |||||||||||||||||| |||||| |||||||||||    
T  33864286 aagaatcttcaaattacagggttgg-aatctaaacaa 33864321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 418 - 553
Target Start/End: Complemental strand, 33916736 - 33916601
Alignment:
Q  418 atcgatgatatagcag-ggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatca 516  Q
    ||||||||||| |||| ||||||||  |||||||||  |||||| | | ||| ||| |||||||||||||||||||||||| ||| ||||||||||| ||    
T  33916736 atcgatgatatcgcagaggggtaaaccgaaattctcgaaaattacaggaggcgaaaataccttaaattttgtaatttgatgccataaaggtccaaaacca 33916637  T
Q  517 aagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    |||||||||||||||||| |||||| |||||||||||    
T  33916636 aagaatcttcaaattacagggttgg-aatctaaacaa 33916601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 394 - 553
Target Start/End: Complemental strand, 17890290 - 17890132
Alignment:
Q  394 atatgggagggggtaaactgaaatatcgatgatatagcaggg-ggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatt 492  Q
    |||||| | ||||||||||||||||||||||||||  ||  | ||||||  ||||||||||||||||| || || |  ||||||||||||||||||||||    
T  17890290 atatggcaaggggtaaactgaaatatcgatgatatgacatagaggtaaaccgaaattctctcaaattacaatggacggaagtaccttaaattttgtaatt 17890191  T
Q  493 tgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    |||||  |||| | |||||||| ||| |||||| |||||||| |||||| |||||||||||    
T  17890190 tgatgctatgaggatccaaaat-aaaaaatctttaaattacagggttgg-aatctaaacaa 17890132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 452 - 553
Target Start/End: Original strand, 7261487 - 7261587
Alignment:
Q  452 ctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaac 551  Q
    ||||||||| | ||||  |||||||||| ||||||| ||||||||| ||||||||||||||| |||||||| ||||||||||| |||||| |||||||||    
T  7261487 ctcaaattacaggggggcaaagtaccttcaattttgaaatttgatgtcatgaaggtccaaaaccaaagaatgttcaaattacagggttgg-aatctaaac 7261585  T
Q  552 aa 553  Q
    ||    
T  7261586 aa 7261587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 423 - 534
Target Start/End: Original strand, 24023179 - 24023289
Alignment:
Q  423 tgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaat 522  Q
    |||||||| ||||| ||||| ||||||| |||||| || ||||||||||| |||||||||||||  ||||||||| | ||||||||||||| |||| |||    
T  24023179 tgatatagtaggggataaatcgaaattcgctcaaaataaaaggggcaaaaataccttaaattttcaaatttgatgtcgtgaaggtccaaaaccaaataat 24023278  T
Q  523 cttcaaattaca 534  Q
    ||| ||||||||    
T  24023279 ctt-aaattaca 24023289  T

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Target: chr1; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 418 - 553
Target Start/End: Original strand, 44078664 - 44078798
Alignment:
Q  418 atcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 517  Q
    |||||||||||  ||||||||| |   |||||  |||||  |||| |||||||||||||||||||||||| ||||| |||  | ||||||||||||  ||    
T  44078664 atcgatgatattacagggggtataccaaaatttgctcaatctatagggggcaaaagtaccttaaattttgaaattttatgttaggaaggtccaaaacaaa 44078763  T
Q  518 agaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    || ||||||||||||||||||||| |||||||||||    
T  44078764 aggatcttcaaattacaaggttgg-aatctaaacaa 44078798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 480 - 617
Target Start/End: Complemental strand, 22315282 - 22315145
Alignment:
Q  480 aaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa-nnnnnnnnacaggggataaaccgaa 578  Q
    |||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| |||||| |||||||||||         ||||||  ||||||  |    
T  22315282 aaattttgtaatatgatgccatgaaggtccaaaatcaaaaaatcttcaaattacagggttgg-aatctaaacaatttttttttacagggagtaaaccaga 22315184  T
Q  579 aatcgttaatattactggagattaaacatatattaaccc 617  Q
    ||||| ||||||||| || || |||||||||||||||||    
T  22315183 aatcgctaatattacaggggagtaaacatatattaaccc 22315145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 453 - 545
Target Start/End: Original strand, 5882997 - 5883089
Alignment:
Q  453 tcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaat 545  Q
    ||||||||| |||||| |||||||||||||||||  ||||||||| ||||||||| ||||  |||| |||||| |||||||||||||| ||||    
T  5882997 tcaaattatgaggggcgaaagtaccttaaattttaaaatttgatgtcatgaaggtacaaagccaaataatcttaaaattacaaggttgaaaat 5883089  T

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Target: chr1; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 421 - 533
Target Start/End: Original strand, 44228413 - 44228524
Alignment:
Q  421 gatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaaga 520  Q
    ||||||||  |||||||||||  ||||||  || |||||| | ||||| |||||||||||||||||| ||||||||| || |||||||||||  ||||||    
T  44228413 gatgatatgccagggggtaaaccgaaatttgcttaaattaca-ggggcgaaagtaccttaaattttgaaatttgatgccacgaaggtccaaacccaaaga 44228511  T
Q  521 atcttcaaattac 533  Q
    |||||||||||||    
T  44228512 atcttcaaattac 44228524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 470 - 543
Target Start/End: Complemental strand, 15654132 - 15654059
Alignment:
Q  470 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 543  Q
    |||||||||||| ||||| ||||||||| |  |||||| |||||||||||||| |||||||||||| |||||||    
T  15654132 aaagtaccttaagttttgaaatttgatgtccagaaggttcaaaatcaaagaattttcaaattacaaagttggaa 15654059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 432 - 535
Target Start/End: Complemental strand, 16639659 - 16639555
Alignment:
Q  432 agggggtaaatagaaattctctcaaattataa-ggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaat 530  Q
    ||||||||||   ||||| |||||||||| || ||||| |||||||| |||||||||||||||||   ||| |||||| |||| ||||||||||| ||||    
T  16639659 agggggtaaaccaaaattttctcaaattacaaaggggcgaaagtaccataaattttgtaatttgacatcataaaggtcaaaaaccaaagaatctttaaat 16639560  T
Q  531 tacaa 535  Q
    |||||    
T  16639559 tacaa 16639555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 418 - 534
Target Start/End: Complemental strand, 22152087 - 22151971
Alignment:
Q  418 atcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaa 517  Q
    ||||||||||| | || |||||||  ||||||  || |||||| |  ||||  ||||||| ||||||||| ||||||||| |||||||||||||||  ||    
T  22152087 atcgatgatatggtagagggtaaactgaaatttgcttaaattacagtgggcgtaagtaccataaattttgcaatttgatgtcatgaaggtccaaaacaaa 22151988  T
Q  518 agaatcttcaaattaca 534  Q
    | |||||||||||||||    
T  22151987 aaaatcttcaaattaca 22151971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 463 - 526
Target Start/End: Complemental strand, 23621280 - 23621217
Alignment:
Q  463 aggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttc 526  Q
    |||||| ||||||| |||||||||| ||||||||| |||||| ||||||| |||||||||||||    
T  23621280 aggggcgaaagtactttaaattttgaaatttgatgtcatgaaagtccaaactcaaagaatcttc 23621217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 463 - 526
Target Start/End: Complemental strand, 23738059 - 23737996
Alignment:
Q  463 aggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttc 526  Q
    |||||| ||||||| |||||||||| ||||||||| |||||| ||||||| |||||||||||||    
T  23738059 aggggcgaaagtactttaaattttgaaatttgatgtcatgaaagtccaaactcaaagaatcttc 23737996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 470 - 526
Target Start/End: Complemental strand, 23652619 - 23652563
Alignment:
Q  470 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttc 526  Q
    ||||||| |||||||||| ||||||||| |||||| ||||||| |||||||||||||    
T  23652619 aaagtactttaaattttgaaatttgatgtcatgaaagtccaaactcaaagaatcttc 23652563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 503 - 553
Target Start/End: Complemental strand, 9240580 - 9240531
Alignment:
Q  503 aaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    |||||||||||||||||||||||||||||||| ||||  ||||||||||||    
T  9240580 aaggtccaaaatcaaagaatcttcaaattacagggtt-caaatctaaacaa 9240531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 19967820 - 19967858
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  19967820 catgaaggtccaaaatcaaaaaatcttcaaattacaagg 19967858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 553
Target Start/End: Original strand, 9240654 - 9240736
Alignment:
Q  470 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    ||||||||||||||||  |||||||||| |||||||||  ||||   |||||||||||| ||||| |||| | |||||||||||    
T  9240654 aaagtaccttaaatttcataatttgatgccatgaaggtttaaaactgaagaatcttcaagttacagggtttg-aatctaaacaa 9240736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 21770981 - 21771019
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  21770981 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 21771019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 381 - 459
Target Start/End: Complemental strand, 22315365 - 22315288
Alignment:
Q  381 taaaaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaatt 459  Q
    |||||||||||| |||||  ||||| ||  |||||||||||||||||| | ||||||||||  |||||| |||||||||    
T  22315365 taaaaaatcaatgatatgacagggg-taccctgaaatatcgatgatatggaagggggtaaactgaaattttctcaaatt 22315288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 23161942 - 23161905
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  23161942 catgaaggtccaaaatcaaa-aatcttcaaattacaagg 23161905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 26190988 - 26191026
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    |||||||||||||||||||| ||||||||||||| ||||    
T  26190988 catgaaggtccaaaatcaaaaaatcttcaaattataagg 26191026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 27666174 - 27666212
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  27666174 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 27666212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 553
Target Start/End: Complemental strand, 33864168 - 33864115
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    ||||||| | ||||| |||||||||||||||||||| |||||| |||||||||||    
T  33864168 catgaagattcaaaaccaaagaatcttcaaattacagggttgg-aatctaaacaa 33864115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 553
Target Start/End: Original strand, 33916754 - 33916807
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    ||||||| | ||||| |||||||||||||||||||| |||||| |||||||||||    
T  33916754 catgaagattcaaaaccaaagaatcttcaaattacagggttgg-aatctaaacaa 33916807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 553
Target Start/End: Complemental strand, 44228392 - 44228339
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    ||||||||||||||| ||||||||||| |||||||| |||| | |||||||||||    
T  44228392 catgaaggtccaaaaccaaagaatctttaaattacagggtt-gtaatctaaacaa 44228339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 494 - 543
Target Start/End: Complemental strand, 6667448 - 6667399
Alignment:
Q  494 gatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 543  Q
    |||||||| | |||| ||||| ||| ||||||||||||||||||||||||    
T  6667448 gatgacatcagggtctaaaatgaaataatcttcaaattacaaggttggaa 6667399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 499 - 536
Target Start/End: Complemental strand, 22387261 - 22387224
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaag 536  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  22387261 catgaaggtccaaaaccaaaaaatcttcaaattacaag 22387224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 2e-39; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 384 - 543
Target Start/End: Original strand, 9044531 - 9044690
Alignment:
Q  384 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaat 483  Q
    |||||| || |||||| | |||||||||||||||||||||||||| ||||||||||||   ||||||||||||||||   | ||  |||||| |||||||    
T  9044531 aaaatcgatgatatggcaaggggtaaactgaaatatcgatgatatggcagggggtaaaccaaaattctctcaaattacgggaggtgaaagtatcttaaat 9044630  T
Q  484 tttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 543  Q
    | | |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  9044631 tatataatttgatgccatgaaggtccaaaatcaaataatcttcaaattacaaggttggaa 9044690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 401 - 543
Target Start/End: Original strand, 25167002 - 25167144
Alignment:
Q  401 agggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgaca 500  Q
    |||||||||||||||||||||||  ||| || || ||||||  ||||||||||||||||| ||||| | |||||||||||||||||||||||||||| ||    
T  25167002 agggggtaaactgaaatatcgatcctatggcgggaggtaaaccgaaattctctcaaattacaagggacgaaagtaccttaaattttgtaatttgatgcca 25167101  T
Q  501 tgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 543  Q
    ||||| |||||||||||| |||||||||||||||  |||||||    
T  25167102 tgaagatccaaaatcaaataatcttcaaattacacagttggaa 25167144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 401 - 534
Target Start/End: Original strand, 9662835 - 9662968
Alignment:
Q  401 agggggtaaactgaaatatcgatgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgaca 500  Q
    |||||||||||  ||||||| |||||||  || ||||||||  ||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||    
T  9662835 agggggtaaaccaaaatatcaatgatatgacaaggggtaaactgaaattctctcaaattacagggggcaaaagtaccttaaattttgtaatttgatgtca 9662934  T
Q  501 tgaaggtccaaaatcaaagaatcttcaaattaca 534  Q
    ||||||| |||||||||| |||||||||||||||    
T  9662935 tgaaggttcaaaatcaaaaaatcttcaaattaca 9662968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 422 - 553
Target Start/End: Complemental strand, 3816681 - 3816552
Alignment:
Q  422 atgatatagcagggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaa 521  Q
    ||||||||||||| ||||||   ||||| |||||||||| | ||||| ||||||||||||||||| |||||||||| ||||||| | ||||| |||||||    
T  3816681 atgatatagcaggaggtaaaccaaaattttctcaaattacagggggcgaaagtaccttaaattttataatttgatgccatgaagattcaaaaccaaagaa 3816582  T
Q  522 tcttcaaattacaaggttggaaatctaaacaa 553  Q
    |||| ||||||  ||||||| |||||||||||    
T  3816581 tctttaaatta-taggttgg-aatctaaacaa 3816552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 455 - 531
Target Start/End: Original strand, 20757608 - 20757684
Alignment:
Q  455 aaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaatt 531  Q
    |||||| ||||||| |||||||||||| ||||||||||||||| |||||| | |||||| |||| ||||||||||||    
T  20757608 aaattacaaggggcgaaagtaccttaagttttgtaatttgatgtcatgaacgaccaaaaccaaaaaatcttcaaatt 20757684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 470 - 532
Target Start/End: Complemental strand, 33198670 - 33198608
Alignment:
Q  470 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaatta 532  Q
    ||||| |||||||||||||||||||||| |||||| ||| |||| ||||||||||||||||||    
T  33198670 aaagtgccttaaattttgtaatttgatgccatgaatgtctaaaaccaaagaatcttcaaatta 33198608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 499 - 617
Target Start/End: Original strand, 3816703 - 3816820
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaannnnnnnnacaggggataaaccgaaaatcgttaatattactggag 598  Q
    |||||||||| |||| |||||||||||||||||||| |||| |||||||||||||        ||||||| ||||||  |||||| |||||||||  |||    
T  3816703 catgaaggtcaaaaaccaaagaatcttcaaattacagggtt-gaaatctaaacaattttttttacagggggtaaaccagaaatcgctaatattacatgag 3816801  T
Q  599 attaaacatatattaaccc 617  Q
      ||||||| |||||||||    
T  3816802 gataaacatgtattaaccc 3816820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 452 - 534
Target Start/End: Complemental strand, 6759824 - 6759742
Alignment:
Q  452 ctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattaca 534  Q
    ||||||||| | ||||  |||||||||||||||||| ||||||||  ||||||  |||||||  |||||||| ||||||||||    
T  6759824 ctcaaattaaagggggtgaaagtaccttaaattttgaaatttgatctcatgaaaatccaaaactaaagaatcatcaaattaca 6759742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 503 - 553
Target Start/End: Original strand, 33200018 - 33200067
Alignment:
Q  503 aaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    |||||||||||||||||||||||||||||||| |||| | |||||||||||    
T  33200018 aaggtccaaaatcaaagaatcttcaaattacagggtt-gtaatctaaacaa 33200067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 553
Target Start/End: Complemental strand, 334993 - 334912
Alignment:
Q  470 aaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    ||||||| ||||||||| |||||| ||| |||||| |||| |||  ||| ||||||||||||||||||||  ||||||||||||    
T  334993 aaagtactttaaattttataatttaatgtcatgaatgtcctaaactaaa-aatcttcaaattacaaggtt-aaaatctaaacaa 334912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 1227934 - 1227972
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  1227934 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 1227972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 2270742 - 2270780
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  2270742 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 2270780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 500 - 542
Target Start/End: Original strand, 18274361 - 18274403
Alignment:
Q  500 atgaaggtccaaaatcaaagaatcttcaaattacaaggttgga 542  Q
    ||||| || |||||||||||||||||||||||||| |||||||    
T  18274361 atgaaagttcaaaatcaaagaatcttcaaattacagggttgga 18274403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 21544388 - 21544426
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  21544388 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 21544426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 29942642 - 29942605
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  29942642 catgaaggtccaaaatcaaa-aatcttcaaattacaagg 29942605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 537
Target Start/End: Original strand, 686551 - 686587
Alignment:
Q  500 atgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  686551 atgaaggtccaaaatcaaa-aatcttcaaattacaagg 686587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 499 - 536
Target Start/End: Original strand, 16119918 - 16119955
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaag 536  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  16119918 catgaaggtccaaaaccaaaaaatcttcaaattacaag 16119955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 537
Target Start/End: Complemental strand, 22495817 - 22495780
Alignment:
Q  500 atgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  22495817 atgaaggtccaaaaccaaaaaatcttcaaattacaagg 22495780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 499 - 536
Target Start/End: Complemental strand, 31174089 - 31174052
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaag 536  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  31174089 catgaaggtctaaaatcaaaaaatcttcaaattacaag 31174052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 73; Significance: 7e-33; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 417 - 532
Target Start/End: Original strand, 25844 - 25960
Alignment:
Q  417 tatcgatgatatagcaggg-ggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatc 515  Q
    ||||||||||||  ||||| ||||||  ||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  25844 tatcgatgatatgacagggtggtaaaccgaaattctctcaaattacaaggggcgaaagtaccttaaattttgtaatttgatgccatgaaggtccaaaatc 25943  T
Q  516 aaagaatcttcaaatta 532  Q
    ||| || ||||||||||    
T  25944 aaaaaaccttcaaatta 25960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 72; Significance: 3e-32; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 455 - 617
Target Start/End: Original strand, 13286 - 13447
Alignment:
Q  455 aaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatc-aaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    |||||| | ||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||    
T  13286 aaattacatggggcgaaagtaccttaaattttgtaatttgatgtcatgaaggtccaaaatcaaaaaaatcttcaaattacaaggttgg-aatctaaacaa 13384  T
Q  554 nnnnnnnnacaggggataaaccgaaaatcgttaatattactggagattaaacatatattaaccc 617  Q
            ||||||| |||||| ||||||| ||||||||| || |  |||||||||||||||||    
T  13385 atttttttacagggggtaaaccaaaaatcgctaatattacagg-gggtaaacatatattaaccc 13447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 463 - 537
Target Start/End: Original strand, 306688 - 306762
Alignment:
Q  463 aggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    |||||| |||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  306688 aggggcgaaagtaccataaattttgtaatttgatgccatgaaggtccaaaaccaaagaatcttcaaattacaagg 306762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 444 - 531
Target Start/End: Complemental strand, 23281 - 23194
Alignment:
Q  444 gaaattctctcaaattataaggggcaaaagtaccttaaattttgtaatttgatgacatgaaggtccaaaatcaaagaatcttcaaatt 531  Q
    |||||||||||||||||||  ||||  || ||| |||||||||||||||||||| |||||||||| ||||||||| | ||||||||||    
T  23281 gaaattctctcaaattatagagggcggaaatacgttaaattttgtaatttgatgccatgaaggtctaaaatcaaaaagtcttcaaatt 23194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 488 - 543
Target Start/End: Complemental strand, 34564 - 34509
Alignment:
Q  488 taatttgatgacatgaaggtccaaaatcaaagaatcttcaaattacaaggttggaa 543  Q
    |||||||||| ||||||||||||| |||||| |||||| |||||||||||||||||    
T  34564 taatttgatgccatgaaggtccaagatcaaaaaatcttaaaattacaaggttggaa 34509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 384 - 492
Target Start/End: Complemental strand, 34993 - 34884
Alignment:
Q  384 aaaatcaataatatgggagggggtaaactgaaatatcgatgatatagcag-ggggtaaatagaaattctctcaaattataaggggcaaaagtaccttaaa 482  Q
    |||||| || |||||  |||||||||||||||||||| |||||||  ||| ||||||||   |||| ||||||||||| | ||||  |||||||||||||    
T  34993 aaaatcgatgatatgatagggggtaaactgaaatatctatgatatgacagaggggtaaaccaaaatactctcaaattacatggggagaaagtaccttaaa 34894  T
Q  483 ttttgtaatt 492  Q
    |||| |||||    
T  34893 ttttttaatt 34884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1462 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold1462
Description:

Target: scaffold1462; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 337 - 375
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  337 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 63149 - 63111
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  63149 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 63111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 553
Target Start/End: Original strand, 145149 - 145201
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaaggttggaaatctaaacaa 553  Q
    |||||||||||||||||||| ||||||||||||| |||| |||||| ||||||||    
T  145149 catgaaggtccaaaatcaaa-aatcttcaaattataaggatggaaa-ctaaacaa 145201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 432513 - 432475
Alignment:
Q  499 catgaaggtccaaaatcaaagaatcttcaaattacaagg 537  Q
    ||||||||||||||| |||| ||||||||||||||||||    
T  432513 catgaaggtccaaaaccaaaaaatcttcaaattacaagg 432475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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