View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0964_low_15 (Length: 437)
Name: NF0964_low_15
Description: NF0964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0964_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 42374834 - 42374762
Alignment:
| Q |
97 |
ttataaactctataataatggcaaatgggcggtgtgagggtggagctctccttactattactatgtcaacaac |
169 |
Q |
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| T |
42374834 |
ttataacctctataataatggcaaatgggcggtgtgagggtggagctctccttactattactatgtcaacaac |
42374762 |
T |
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Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 42374665 - 42374596
Alignment:
| Q |
280 |
caacttacacctacgtactaaaagataaagtcgctaactattttatagactcgtacttaagtcacaggtt |
349 |
Q |
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| T |
42374665 |
caacttacacctacgtagtaaaagataaagtcactaactattttatagactcgtacttaagtcacaggtt |
42374596 |
T |
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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 247 - 325
Target Start/End: Original strand, 3194232 - 3194311
Alignment:
| Q |
247 |
ttcgtcgtcccaaagaatacaactgta-ccaatccaacttacacctacgtactaaaagataaagtcgctaactattttat |
325 |
Q |
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| T |
3194232 |
ttcgtcgtctcaaagaatacaactgtttccaatccaacttacacctacgtactaaaagataaagtcactaactattttat |
3194311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 3194093 - 3194150
Alignment:
| Q |
97 |
ttataaactctataataatggcaaatgggcggtgtgagggtggagctctccttactat |
154 |
Q |
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| T |
3194093 |
ttataacctctataataatggcaaatgggcggtgtgagagtggagctctccttactat |
3194150 |
T |
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