View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0964_low_16 (Length: 416)
Name: NF0964_low_16
Description: NF0964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0964_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 134 - 408
Target Start/End: Complemental strand, 28526007 - 28525733
Alignment:
| Q |
134 |
tttttctatcacggtacggtcgcacttatcaattaagattcattgtagtcaataactcttgaagtcgctacaattaagcaagttaagtccgttgatagag |
233 |
Q |
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| T |
28526007 |
tttttctatcacggtacggccgcacttatcaattgagattgattgaaatcaataactcttgaagtcgctacaattaggcaagttaagtcagttgatagag |
28525908 |
T |
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| Q |
234 |
attagatgacttacaatgtgactcgacaaatccaaaattagaaatttaaattgtttaattttcataaatggttgagaacgctgatttcagttgcccccta |
333 |
Q |
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| T |
28525907 |
attagatgactcacaatgtgactcgacaaattcaaaattagaaatttaaattgtttaattttcataaatggtcgagaacgctgatttcagtcgtccccta |
28525808 |
T |
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| Q |
334 |
gcacaaaagattaatgggacaaaatactctccttcattttactttccttctcttttctaactccacctctgtgct |
408 |
Q |
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| T |
28525807 |
gcacaaaagattaataggacaaaatactctccttcattttactttccttctcttttctaactccacctctgtgct |
28525733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 28526118 - 28526067
Alignment:
| Q |
29 |
atatataatgttataaattataaggtcacacatagaattttcaacaaagttc |
80 |
Q |
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| T |
28526118 |
atatataatgttataaattataaggtcacacatagaattttcattaaagttc |
28526067 |
T |
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