View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0964_low_18 (Length: 409)
Name: NF0964_low_18
Description: NF0964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0964_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 27 - 364
Target Start/End: Complemental strand, 29052407 - 29052070
Alignment:
| Q |
27 |
agagaaagagtggaagtaggtgatgatggtgaagaaagagtgaaaagaatgtggaagaaagcatttttgatatttgcattatttttgttaaagaagaata |
126 |
Q |
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| T |
29052407 |
agagaaagagtggaagtaggtgatgatggtgaagaaagagtgaaaagaatgtggaagaaagcatttttgatatttgcattatttttgttaaagaagaata |
29052308 |
T |
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| Q |
127 |
agtgaatgagtggtgcatggagcttcttggggtattgtaatgttgttaatctttatcaaccatatatttcatattccatcatagcaacaaaaatagttga |
226 |
Q |
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| T |
29052307 |
agtgaatgagtggtgcatggagcttcttggggtattgtaatgttgttaatctttatcaaccatatatttcatattccatcatagcaacaaaaatagttga |
29052208 |
T |
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| Q |
227 |
aattgatgtttttatatggttgaaattttggaaatatgaaaaattgttacataacattatctagagataaaagagtacgacattttgtgtatatgtgagt |
326 |
Q |
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| T |
29052207 |
aattgatgtttttatatggttgaaattttggaaatatgaaaaattgttacataacattatctagagataaaagagtacgacattttgtgtatatgtgagt |
29052108 |
T |
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| Q |
327 |
tacacgtgtatggattggcttgctttgttgattccatg |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
29052107 |
tacacgtgtatggattggcttgctttgttgattccatg |
29052070 |
T |
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