View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0964_low_2 (Length: 630)

Name: NF0964_low_2
Description: NF0964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0964_low_2
NF0964_low_2
[»] chr5 (3 HSPs)
chr5 (99-620)||(38605236-38605764)
chr5 (99-188)||(40181191-40181283)
chr5 (518-551)||(40180851-40180884)
[»] chr8 (10 HSPs)
chr8 (403-563)||(44459952-44460121)
chr8 (403-563)||(44467485-44467654)
chr8 (403-563)||(34502528-34502698)
chr8 (419-564)||(44459275-44459420)
chr8 (419-564)||(44466808-44466953)
chr8 (99-176)||(44459639-44459716)
chr8 (99-176)||(44467172-44467249)
chr8 (115-188)||(44460357-44460430)
chr8 (115-188)||(44467890-44467963)
chr8 (105-188)||(34502246-34502329)
[»] chr1 (2 HSPs)
chr1 (394-564)||(46358821-46358991)
chr1 (115-188)||(46359227-46359300)
[»] chr6 (1 HSPs)
chr6 (524-564)||(410692-410732)


Alignment Details
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 99 - 620
Target Start/End: Complemental strand, 38605764 - 38605236
Alignment:
Q  99 atattactttacacttcaagctcttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgctgctgc---ac 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||    
T  38605764 atattactttacacttcaagctcttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgctgctgctgcac 38605665  T
Q  196 tccaaagatgataatcttcactcttcttctcaaggttacacttacacttaccttcctccttgtccagatgatgtcactgcatctgaagatttccggatag 295  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  38605664 tccaaagatgataatcgtcactcttcttctcaaggctacacttacacttaccttcctccttgtccagacgatgtcactgcatctgaagatttccggatag 38605565  T
Q  296 taatgacatttcttagtggtactcctcctcctctccataattattattacaaatttaatagatgtttcagtttcacatgcttggaaactctg-------c 388  Q
    | ||||||||||||||||||||||||   ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       |    
T  38605564 tgatgacatttcttagtggtactcct---cctctccataattataattacaaatttaatagatgtttcagtttcacatgcttggaaactctgcatcagcc 38605468  T
Q  389 atcagcatcaaccacattttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactt 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38605467 atcagcatcaaccacattttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcatattcttattcactt 38605368  T
Q  489 tatcaagtgggcttttaggagtaattcacatctcatcactacccctgttttggaatcccttgtttcagcaatatgcgatgttccaactaaatttgatgtt 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38605367 tatcaagtgggcttttaggagtaattcacatctcatcactacccctgttttggaatctcttgtttcagcaatatgcgatgttccaactaaatttgatgtt 38605268  T
Q  589 gaactaaggcagaatgacatactttttctgtg 620  Q
    ||||||||||||||||||||||||||||||||    
T  38605267 gaactaaggcagaatgacatactttttctgtg 38605236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 188
Target Start/End: Complemental strand, 40181283 - 40181191
Alignment:
Q  99 atattactttacacttcaagctcttttgac---cacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgct 188  Q
    |||||||| |||||| |||||||||||||    ||||| ||||||||||||||| |||||||||||    ||||||| |||||| ||||||||    
T  40181283 atattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaagcagagtctatctatcaaaagttgctgct 40181191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 551
Target Start/End: Complemental strand, 40180884 - 40180851
Alignment:
Q  518 atctcatcactacccctgttttggaatcccttgt 551  Q
    |||||||||||||||||||| |||||||||||||    
T  40180884 atctcatcactacccctgttctggaatcccttgt 40180851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 7e-26; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 403 - 563
Target Start/End: Original strand, 44459952 - 44460121
Alignment:
Q  403 cattttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactttatcaagtgggctt 502  Q
    |||||| |||||||| |||||||||||||||  ||||||| |  | ||||||||||||||||||| |||||||||||||| |||||||| ||||||||||    
T  44459952 cattttgtactcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaagtgggctt 44460051  T
Q  503 ---ttaggag------taattcacatctcatcactacccctgttttggaatcccttgtttcagcaatatg 563  Q
       | |||||      | ||  | |||||||||||||||||||| |||||||||||||||||| ||||||    
T  44460052 ggatgaggaggaacacttatcaagatctcatcactacccctgttctggaatcccttgtttcagaaatatg 44460121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 403 - 563
Target Start/End: Original strand, 44467485 - 44467654
Alignment:
Q  403 cattttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactttatcaagtgggctt 502  Q
    |||||| |||||||| |||||||||||||||  ||||||| |  | ||||||||||||||||||| |||||||||||||| |||||||| ||||||||||    
T  44467485 cattttgtactcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaagtgggctt 44467584  T
Q  503 ---ttaggag------taattcacatctcatcactacccctgttttggaatcccttgtttcagcaatatg 563  Q
       | |||||      | ||  | |||||||||||||||||||| |||||||||||||||||| ||||||    
T  44467585 ggatgaggaggaacacttatcaagatctcatcactacccctgttctggaatcccttgtttcagaaatatg 44467654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 403 - 563
Target Start/End: Complemental strand, 34502698 - 34502528
Alignment:
Q  403 cattttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcac-tttatcaagtgggct 501  Q
    |||||| |||||||| |||||||| |||| | |||||||| |  |  |||||||||||||||||| |||||||||||||| ||| ||||| |||||||||    
T  34502698 cattttgtactcaaagttattgaagcctcttctcaaactaaattaactgaaaccccaaaggtttcgcctcataatcttatccacttttatgaagtgggct 34502599  T
Q  502 tttaggag---------taattcacatctcatcactacccctgttttggaatcccttgtttcagcaatatg 563  Q
    |  |||||         | ||  ||||||||| ||||||| |||| |||||||||||||||||||||||||    
T  34502598 tggaggaggaggaacacttataaacatctcattactacccttgttctggaatcccttgtttcagcaatatg 34502528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 419 - 564
Target Start/End: Original strand, 44459275 - 44459420
Alignment:
Q  419 ttattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactttatcaagtgggcttttaggagtaattcaca 518  Q
    ||||||||||||| |||||||||| |   |||||| |||||||||||   ||||||||||||||  ||||||| |||| || ||  | || |||     |    
T  44459275 ttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaagga 44459374  T
Q  519 tctcatcactacccctgttttggaatcccttgtttcagcaatatgc 564  Q
     |||||||||||||||||| ||||||||||||||||| ||||||||    
T  44459375 cctcatcactacccctgttctggaatcccttgtttcatcaatatgc 44459420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 419 - 564
Target Start/End: Original strand, 44466808 - 44466953
Alignment:
Q  419 ttattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactttatcaagtgggcttttaggagtaattcaca 518  Q
    ||||||||||||| |||||||||| |   |||||| |||||||||||   ||||||||||||||  ||||||| |||| || ||  | || |||     |    
T  44466808 ttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaagga 44466907  T
Q  519 tctcatcactacccctgttttggaatcccttgtttcagcaatatgc 564  Q
     |||||||||||||||||| ||||||||||||||||| ||||||||    
T  44466908 cctcatcactacccctgttctggaatcccttgtttcatcaatatgc 44466953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 44459639 - 44459716
Alignment:
Q  99 atattactttacacttcaagctcttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtca 176  Q
    |||||||||||| || ||||||||||||||||| || |||||| || |||| ||||| |||||  |||||||||||||    
T  44459639 atattactttactctgcaagctcttttgaccacgacctgtagtactcatatgatccatcaagcagcttctatctgtca 44459716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 44467172 - 44467249
Alignment:
Q  99 atattactttacacttcaagctcttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtca 176  Q
    |||||||||||| || ||||||||||||||||| || |||||| || |||| ||||| |||||  |||||||||||||    
T  44467172 atattactttactctgcaagctcttttgaccacgacctgtagtactcatatgatccatcaagcagcttctatctgtca 44467249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 44460357 - 44460430
Alignment:
Q  115 caagctcttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgct 188  Q
    |||||| |||||||||||| |||||   ||||||| |||||||||||| ||||||| ||||||||  |||||||    
T  44460357 caagcttttttgaccacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct 44460430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 44467890 - 44467963
Alignment:
Q  115 caagctcttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgct 188  Q
    |||||| |||||||||||| |||||   ||||||| |||||||||||| ||||||| ||||||||  |||||||    
T  44467890 caagcttttttgaccacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct 44467963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 188
Target Start/End: Complemental strand, 34502329 - 34502246
Alignment:
Q  105 ctttacacttcaagctcttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgct 188  Q
    |||||||||  |||||||||||| |||||  ||||   ||||||| | |||||||||| ||||||||||||||||  |||||||    
T  34502329 ctttacactgaaagctcttttgatcacaagatgtatcactgatatgacccaccaagccgcttctatctgtcaaaagatgctgct 34502246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 394 - 564
Target Start/End: Original strand, 46358821 - 46358991
Alignment:
Q  394 catcaaccacattttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactttatca 493  Q
    ||||||| ||| |||  ||| ||| ||||||||||||| |||||||||| |   |||||| |||||||||||   ||||||||||||||  ||||||| |    
T  46358821 catcaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataa 46358920  T
Q  494 agtgggcttttaggagtaattcacatctcatcactacccctgttttggaatcccttgtttcagcaatatgc 564  Q
    ||| || ||  | || |||     | |||||||||||||||||| |||||||||||||||||| |||||||    
T  46358921 agttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcagaaatatgc 46358991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 46359227 - 46359300
Alignment:
Q  115 caagctcttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgct 188  Q
    |||||| |||||||||||| |||||   ||||||| |||||||||||| ||||||| ||||||||  |||||||    
T  46359227 caagcttttttgaccacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct 46359300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 524 - 564
Target Start/End: Original strand, 410692 - 410732
Alignment:
Q  524 tcactacccctgttttggaatcccttgtttcagcaatatgc 564  Q
    |||||||||||||| |||| |||||| ||||||||||||||    
T  410692 tcactacccctgttctggagtcccttatttcagcaatatgc 410732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University