View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0964_low_21 (Length: 400)
Name: NF0964_low_21
Description: NF0964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0964_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 96 - 325
Target Start/End: Original strand, 50510893 - 50511128
Alignment:
| Q |
96 |
acgaataacctcaccaagaagaggacaccatgatttacttgcaaaccaagaaatcaagcaaccgaataaaatacatacttgcacacctatccataacatc |
195 |
Q |
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| T |
50510893 |
acgaataacctcaccaagaagaggacaccatgatttacttgcaaaccaagaaatcaagcaaccgaataaaatacatacttgcacacctatccataacatc |
50510992 |
T |
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| Q |
196 |
aattttttgttaagata---------------tttttgttaaattcaactacaattctgtgataatcatcatcaatcaacctttttgttagtggggtcgt |
280 |
Q |
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| T |
50510993 |
aattttttgttaagatattttttttcctcaattttttgttaaattcaactac---------ataatcattatcaatcaacctttttgttagtggggtcgt |
50511083 |
T |
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| Q |
281 |
ttaccccataatttatggttgtccgtccatgtatataagtaagag |
325 |
Q |
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| T |
50511084 |
ttaccccataatttatggttgtccgtccatgtatataagtaagag |
50511128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 350 - 400
Target Start/End: Original strand, 50511145 - 50511195
Alignment:
| Q |
350 |
atgtatataagtaagagtttaaaaacactatataacagaaagtattttaca |
400 |
Q |
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| T |
50511145 |
atgtatataagtaagagtttaaaaacactatataacagaaagtattttaca |
50511195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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