View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0964_low_27 (Length: 355)

Name: NF0964_low_27
Description: NF0964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0964_low_27
NF0964_low_27
[»] chr8 (6 HSPs)
chr8 (29-343)||(4215467-4215781)
chr8 (137-215)||(4218139-4218217)
chr8 (285-339)||(4053845-4053899)
chr8 (130-215)||(34357100-34357185)
chr8 (285-339)||(3925020-3925074)
chr8 (250-339)||(4218042-4218131)
[»] chr1 (2 HSPs)
chr1 (130-334)||(5398416-5398630)
chr1 (287-334)||(5388875-5388922)
[»] chr4 (1 HSPs)
chr4 (288-333)||(11952603-11952648)
[»] chr3 (1 HSPs)
chr3 (168-237)||(54726832-54726901)
[»] chr5 (1 HSPs)
chr5 (84-159)||(41804391-41804466)


Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 29 - 343
Target Start/End: Complemental strand, 4215781 - 4215467
Alignment:
Q  29 acaatctatttgaaagaacaaacacatcttatacaaaaacaaacaaccgaacgttttttcagatttgtaaatatcatcgtctttctttggttgatttctt 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4215781 acaatctatttgaaagaacaaacacatcttatacaaaaacaaacaaccgaacgttttttcagatttgtaaatatcatcgtctttctttggttgattactt 4215682  T
Q  129 gttcctgcaccctcagcacaataaccattcaaaattgcaacaacaaagagagccaaaacaaatgaagcagtgatttttgccatagtgtatgaatgagtat 228  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4215681 gtttctgcaccctcagcacaataaccattcaaaattgcaacaacaaagagagccaaaacaaatgaagcagtgatttttgccatagtgtatgaatgagtat 4215582  T
Q  229 ttttatttttctttattgagtttgtttagcatggaatgaaattggcttcatatgaatccaatttatagacctattgattaccttaaatgagaagtgaatg 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  4215581 ttttatttttctttattgagtttgtttagcatggaatgaaattggcttcatatgaatccaatttatagatctattgatttccttaaatgagaagtgaatg 4215482  T
Q  329 aattaattgtgccta 343  Q
    |||||||||||||||    
T  4215481 aattaattgtgccta 4215467  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 4218217 - 4218139
Alignment:
Q  137 accctcagcacaataaccattcaaaattgcaacaacaaagagagccaaaacaaatgaagcagtgatttttgccatagtg 215  Q
    ||||||||||| ||| |||||||||||||||||||||| |||| | ||||||| ||||||| || ||||||||||||||    
T  4218217 accctcagcactatagccattcaaaattgcaacaacaaggagaactaaaacaattgaagcaatggtttttgccatagtg 4218139  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 4053899 - 4053845
Alignment:
Q  285 tccaatttatagacctattgattaccttaaatgagaagtgaatgaattaattgtg 339  Q
    ||||||||||||  ||||||||||||||||||||||||||||| |||||| ||||    
T  4053899 tccaatttataggactattgattaccttaaatgagaagtgaatcaattaaatgtg 4053845  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 34357185 - 34357100
Alignment:
Q  130 ttcctgcaccctcagcacaataaccattcaaaattgcaacaacaaagagagccaaaacaaatgaagcagtgatttttgccatagtg 215  Q
    |||||||||||||||||| ||| |||||||  ||||||||||| | || | | | ||||| ||||||| || ||||||||||||||    
T  34357185 ttcctgcaccctcagcaccatagccattcagcattgcaacaactaggaaaactagaacaagtgaagcaatggtttttgccatagtg 34357100  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 3925020 - 3925074
Alignment:
Q  285 tccaatttatagacctattgattaccttaaatgagaagtgaatgaattaattgtg 339  Q
    ||||||||||||  ||| | ||||||||||||||||||||||| |||||| ||||    
T  3925020 tccaatttataggactaattattaccttaaatgagaagtgaatcaattaaatgtg 3925074  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 339
Target Start/End: Complemental strand, 4218131 - 4218042
Alignment:
Q  250 ttgtttagcatggaatgaaattggcttcatatgaatccaatttatagacctattgattaccttaaatgagaagtgaatgaattaattgtg 339  Q
    |||||| ||||||||| |||||| ||  |||  | |||||||||||||  | |||||| |  ||||||| ||||||||||||||||||||    
T  4218131 ttgttttgcatggaataaaattgactcaatagtactccaatttatagaattgttgatttctctaaatgataagtgaatgaattaattgtg 4218042  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 130 - 334
Target Start/End: Complemental strand, 5398630 - 5398416
Alignment:
Q  130 ttcctgcaccctcagcacaataaccattcaaaattgcaacaacaaagagagccaaaacaaatgaagcagtgatttttgccatagt----gtatgaatgag 225  Q
    |||||||||||||||||| ||| ||||||||||| ||  |||||| |||| ||||||||| ||||||||||  ||||||||||||    |||||||||||    
T  5398630 ttcctgcaccctcagcactatagccattcaaaatcgccgcaacaaggagaaccaaaacaagtgaagcagtggattttgccatagtgtaagtatgaatgag 5398531  T
Q  226 tatttttatttttcttt-----attgagtttgtttagc-atggaatgaaattggcttcatatgaatccaatttatagacctat-tgattaccttaaatga 318  Q
    || ||||||||| || |     || ||  |||||| || ||||||| |||||| || || |  | ||| ||||||||| |||| ||||| ||||||||||    
T  5398530 ta-ttttattttcctcttgtcgatggatattgttttgcaatggaataaaattgtctccaaaccactccgatttatagaactatatgatttccttaaatga 5398432  T
Q  319 gaagtgaatgaattaa 334  Q
    ||||||||||||||||    
T  5398431 gaagtgaatgaattaa 5398416  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 334
Target Start/End: Complemental strand, 5388922 - 5388875
Alignment:
Q  287 caatttatagacctattgattaccttaaatgagaagtgaatgaattaa 334  Q
    |||||||| || ||| ||||| ||||||||||||||||||||||||||    
T  5388922 caatttatcgaactaatgatttccttaaatgagaagtgaatgaattaa 5388875  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 11952603 - 11952648
Alignment:
Q  288 aatttatagacctattgattaccttaaatgagaagtgaatgaatta 333  Q
    |||||||||| ||| ||||| |||||||||||||||||||||||||    
T  11952603 aatttatagaactagtgatttccttaaatgagaagtgaatgaatta 11952648  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 54726901 - 54726832
Alignment:
Q  168 acaacaaagagagccaaaacaaatgaagcagtgatttttgccatagtgtatgaatgagtatttttatttt 237  Q
    |||||||||| | | | |||||||||||||||| ||||||||||| | || |||| ||||||||||||||    
T  54726901 acaacaaagacaactagaacaaatgaagcagtggtttttgccataatataagaatcagtatttttatttt 54726832  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 159
Target Start/End: Complemental strand, 41804466 - 41804391
Alignment:
Q  84 ttttcagatttgtaaatatcatcgtctttctttggttgatttcttgttcctgcaccctcagcacaataaccattca 159  Q
    |||| ||||||||||||| |||| |||||||||||| |||| | | ||||| || ||||||||  |||||||||||    
T  41804466 ttttgagatttgtaaataccatcatctttctttggtggattacctcttcctccatcctcagcattataaccattca 41804391  T

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