View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0964_low_28 (Length: 347)
Name: NF0964_low_28
Description: NF0964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0964_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 79 - 318
Target Start/End: Original strand, 21551876 - 21552115
Alignment:
| Q |
79 |
aacacttatcaatgatattaaagnnnnnnnttatgtttatatcttcacannnnnnncactattttcttcatagtaatataatttatatctctacacctta |
178 |
Q |
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| T |
21551876 |
aacacttatcaatgatattaaagaaaaaaattatgtttatatctttacatttttttcacaattttcttcatagtaatataatttatatctctacatctta |
21551975 |
T |
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| Q |
179 |
cctgaattttgattcaaggtaatttgaacttcttggcttttgtcgagaattcgtatattttctttcccccataaaggagcatagtttttctcgaatggaa |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21551976 |
cctgaattttgattcaaggtaatttgaacttcttggctttggtcgagaattcgtatattttctttcccccataaaggagcatagtttttctcgaatggaa |
21552075 |
T |
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| Q |
279 |
cattgtctaagttaacaccttttatgttcaatggagcaat |
318 |
Q |
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| T |
21552076 |
cattgtctaagttaacaccttttatgttcaatggagcaat |
21552115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 176 - 285
Target Start/End: Complemental strand, 21655725 - 21655616
Alignment:
| Q |
176 |
ttacctgaattttgattcaaggtaatttgaacttcttggcttttgtcgagaattcgtatattttctttcccccataaaggagcatagtttttctcgaatg |
275 |
Q |
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|||||||| | ||||||||| |||| ||||||||| | |||| || ||||||| | |||||||||| ||||||||||||||||||||||| | ||||| |
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| T |
21655725 |
ttacctgattcttgattcaatgtaagttgaacttcccgactttggttgagaatttgcatattttcttgcccccataaaggagcatagttttgcatgaatg |
21655626 |
T |
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| Q |
276 |
gaacattgtc |
285 |
Q |
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|||||||||| |
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| T |
21655625 |
gaacattgtc |
21655616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 21551840 - 21551881
Alignment:
| Q |
8 |
gggacaaaaacagttgttaaaatcaaatcaccgtaaaacact |
49 |
Q |
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| T |
21551840 |
gggacaaaaacagttgttaaaatcaaatcaccgtaaaacact |
21551881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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