View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0964_low_29 (Length: 346)
Name: NF0964_low_29
Description: NF0964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0964_low_29 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 93 - 346
Target Start/End: Complemental strand, 41613309 - 41613062
Alignment:
| Q |
93 |
tcaacatattaccaatgtatatacatctcacatggatgaagttaagagttaagatagttaaagaatgtggagtgaataagcagttaaacctagatttgat |
192 |
Q |
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| T |
41613309 |
tcaacatattaccaatgtatatacatctcacatggatgaagttaagg-------tagttaaagaatgtggagtgaataagcagttaaacctagatttgat |
41613217 |
T |
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| Q |
193 |
ttctcttattttt-attagaacatgtctagtacttgtagtgttctacataagtacggtatgttttttcactctcaaattccttaaaatattacccaccgt |
291 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41613216 |
ttctcttattttttattagaacatgtctagtacttgtagtgttctacataagtacggtatgttttttcactctcaaattccttaaaatattacccaccgt |
41613117 |
T |
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| Q |
292 |
tcattataaaaggcaaaaagaaagcattttctgtctaaaaagaaaaggataaggt |
346 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41613116 |
tcattataaaaggcaaaaagaaagcattttctgtctaaaaagaaaaggataaggt |
41613062 |
T |
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