View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0964_low_3 (Length: 587)
Name: NF0964_low_3
Description: NF0964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0964_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 142 - 560
Target Start/End: Original strand, 22718877 - 22719277
Alignment:
| Q |
142 |
tagtattttcgtgatttggagatggtttatgagtttaatgttgcccctgttcataaggtgaatcaactgattggttgtcatacattgcttcaggtaaaat |
241 |
Q |
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| T |
22718877 |
tagtattttcgtgatttggagatggtttatgagtttaatgttgcccctgttcataaggtgaatcaactgattggttgtcatacattgcttcaggtaaaat |
22718976 |
T |
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| Q |
242 |
aaatacatggttctttatataacttcaaagatgaaatagactatgttgtagtattttcgtgatttggagatggtttattatatattgattatggcataaa |
341 |
Q |
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| T |
22718977 |
aaatacatggttctttatataactttaaagatgaaatagactatgttg------tttactaatt------------attatatattgattatggcataaa |
22719058 |
T |
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| Q |
342 |
catttcaacacttttggggtgttggagccaaggattttgaggaaggatacatggagaatcgacacccgcgtgctaacatgtttacatctcttaagggtct |
441 |
Q |
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| T |
22719059 |
catttcaacacttttggggtgttggagccaaggattttgaggaaggatacatggagaatcgacacccgcgtgctaacatgtttacatctcttaagggtct |
22719158 |
T |
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| Q |
442 |
cattgtcacaaacctttaccgagaggacctggaccggttgttagtgaatgattgcgtcttttaaccatatgtcgctcgctaaaacgcacattcattctag |
541 |
Q |
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| T |
22719159 |
cattgtcacaaacctttaccgagaggacttggaccggttgttagtgaatgattgcgtcttttaaccatatgtcgctcgctaaaacgcacattcattctag |
22719258 |
T |
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| Q |
542 |
aacatcagcgtctactctg |
560 |
Q |
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| T |
22719259 |
aacatcagcgtctactctg |
22719277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 22718884 - 22719025
Alignment:
| Q |
1 |
ttcgtgatttggagatggtttatgagtttaatgttgcccctgttcataaggtgaatcaactgattggttgtcatacattgcttcaggtaaaataaataca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22718884 |
ttcgtgatttggagatggtttatgagtttaatgttgcccctgttcataaggtgaatcaactgattggttgtcatacattgcttcaggtaaaataaataca |
22718983 |
T |
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| Q |
101 |
tggttctttatataacttcaaagatgaaatagactatgttgt |
142 |
Q |
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| T |
22718984 |
tggttctttatataactttaaagatgaaatagactatgttgt |
22719025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 438
Target Start/End: Complemental strand, 36659469 - 36659396
Alignment:
| Q |
363 |
ttggagccaaggattttgaggaaggatacatggagaatcgacacccgcgtgctaacatgtttacatctcttaaggg |
438 |
Q |
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| T |
36659469 |
ttggggccaaggattttgaggaagggtacatggaggatcgacacccacgtggt--gatgtttacatcgcttaaggg |
36659396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 461
Target Start/End: Complemental strand, 32079363 - 32079271
Alignment:
| Q |
369 |
ccaaggattttgaggaaggatacatggagaatcgacacccgcgtgctaacatgtttacatctcttaagggtctcattgtcacaaacctttacc |
461 |
Q |
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|||||||||||||| |||| ||||||||| |||||||| | |||| || ||||||||| | ||||||| || ||| |||||||||| ||||| |
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| T |
32079363 |
ccaaggattttgagtaagggtacatggaggatcgacactcacgtgttaggatgtttacaccgcttaaggatcacatggtcacaaacccttacc |
32079271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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