View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0964_low_32 (Length: 340)
Name: NF0964_low_32
Description: NF0964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0964_low_32 |
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| [»] chr1 (5 HSPs) |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 340
Target Start/End: Original strand, 14786544 - 14786868
Alignment:
| Q |
16 |
atgcagagatgatttcaaagttggtgtgttgttgtagtggatgaaccggaaggagagaacgaattgcagctacctcggtgggaccaaagaagaaagtgtg |
115 |
Q |
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| T |
14786544 |
atgcagagatgatttcaaagtcggtgtgttgttgtagtggatgaaccggaaggagagaacgaattgcagctacctcggtgggaccaaagaagaaagtgtg |
14786643 |
T |
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| Q |
116 |
atgaaccatgtcgtctaagggaatgacggttcatttgtttcgtggtacttcttcatattcgtgatgagtacacgtaattcttggtgggttccttgcattt |
215 |
Q |
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| T |
14786644 |
atgaaccatgtcgtctaagggaatgaccgttcctttgtttcgtggtacttcttcatattcgtgatgagtacacgtaattcttggtgggttccttgcattt |
14786743 |
T |
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| Q |
216 |
agaagctctctacaccacaccggtgagattgaaggttcgttcattccgcgagatatttctcctaaggcgcttaagaatttaaataaacctgatgagtcgc |
315 |
Q |
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| T |
14786744 |
agaagctctctacaccacaccggtgagattgaaggttcgttcattccgcgagatatttctcctaaggcacttaagaatttaaataaacctgatgagtcgc |
14786843 |
T |
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| Q |
316 |
taattgtatggtttagacgaagagc |
340 |
Q |
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| T |
14786844 |
taattgtatggtttagacgaagagc |
14786868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 62 - 283
Target Start/End: Complemental strand, 14759295 - 14759074
Alignment:
| Q |
62 |
cggaaggagagaacgaattgcagctacctcggtgggaccaaagaagaaagtgtgatgaaccatgtcgtctaagggaatgacggttcatttgtt-tcgtgg |
160 |
Q |
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| T |
14759295 |
cggaaggagagagcgaattgcagctacctcggtcggaccaatgaagaaagtgcggtgaaccatgtcgtctaagggaaacatggttcctttgttgtcg-gg |
14759197 |
T |
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| Q |
161 |
tacttcttcatattcgtgatgagtacacgtaattcttggtgggttccttgcatttagaagctctctacaccacaccggtgagattgaaggttcgttcatt |
260 |
Q |
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| T |
14759196 |
ttctggatcgtattcacgatgagtacatgtcactattggtggatcccttgcattaagaagctctctgctccacactggtgagattgaaggtttactcatc |
14759097 |
T |
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| Q |
261 |
ccgcgagatatttctcctaaggc |
283 |
Q |
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| T |
14759096 |
ccacgagatatttctcctaaggc |
14759074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 63 - 294
Target Start/End: Original strand, 14878445 - 14878676
Alignment:
| Q |
63 |
ggaaggagagaacgaattgcagctacctcggtgggaccaaagaagaaagtgtgatgaaccatgtcgtctaagggaatgacggttcatttgtt-tcgtggt |
161 |
Q |
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| T |
14878445 |
ggaaggagagtgcgaattgcagctacctcggtcggaccaatgaagaaagtgcggtgaaccatgtcgtctaagggaaacatggttcctttgttgtcg-ggt |
14878543 |
T |
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| Q |
162 |
acttcttcatattcgtgatgagtacacgtaattcttggtgggttccttgcatttagaagctctctacaccacaccggtgagattgaaggttcgttcattc |
261 |
Q |
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| T |
14878544 |
tctggatcgtattcacgatgattatatgtcactcttggtggatcccttgcattaagaagctctctgctccacaccggtgagattgaaggtttgctcatcc |
14878643 |
T |
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| Q |
262 |
cgcgagatatttctcctaaggcgcttaagaatt |
294 |
Q |
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| T |
14878644 |
cacgagatatctctcctaaggcactcaagaatt |
14878676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 84 - 340
Target Start/End: Original strand, 14767523 - 14767779
Alignment:
| Q |
84 |
gctacctcggtgggaccaaagaagaaagtgtgatgaaccatgtcgtctaagggaatgacggttcatttgtt-tcgtggtacttcttcatattcgtgatga |
182 |
Q |
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||||||||||| ||||| ||||| |||| | ||||| ||||||| ||||||||||| | |||| |||| | ||| || |||| ||| ||||| ||||| |
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| T |
14767523 |
gctacctcggttggaccgaagaaaaaagagcgatgagccatgtcatctaagggaataattgttcctttggtgtcg-ggaacttgttcgtattcacgatga |
14767621 |
T |
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| Q |
183 |
gtacacgtaattcttggtgggttccttgcatttagaagctctctacaccacaccggtgagattgaaggttcgttcattccgcgagatatttctcctaagg |
282 |
Q |
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| T |
14767622 |
gtgcatgttactctcggtggatcccttgaatttagaagctccctatgccataccggtaagattgaaggttcattcatcccgcaagaaatttcacctaagg |
14767721 |
T |
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| Q |
283 |
cgcttaagaatttaaataaacctgatgagtcgctaattgtatggtttagacgaagagc |
340 |
Q |
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| || | ||||| | ||||| | || ||||| ||||||||||||||||||||||| |
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| T |
14767722 |
cactcatgaattggaccaaacccgctgcatcgctcattgtatggtttagacgaagagc |
14767779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 162 - 259
Target Start/End: Original strand, 14873682 - 14873779
Alignment:
| Q |
162 |
acttcttcatattcgtgatgagtacacgtaattcttggtgggttccttgcatttagaagctctctacaccacaccggtgagattgaaggttcgttcat |
259 |
Q |
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| T |
14873682 |
acttgttcatattcatgatgagtgcatgttactcttggtggatcccttgcgtttagaagctctctatgccatactggtgagattgaaggtttgttcat |
14873779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 252
Target Start/End: Original strand, 84506 - 84695
Alignment:
| Q |
63 |
ggaaggagagaacgaattgcagctacctcggtgggaccaaagaagaaagtgtgatgaaccatgtcgtctaagggaatgacggttcatttgtttcgtggta |
162 |
Q |
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| T |
84506 |
ggaagtagagaacgaattgcggctacctcggttgcaccaaagaagaaagcatggtggaccatgtcatctaaggaaaatgtgtttgctttgttgtcaggtt |
84605 |
T |
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| Q |
163 |
cttcttcatattcgtgatgagtacacgtaattcttggtgggttccttgcatttagaagctctctacaccacaccggtgagattgaaggtt |
252 |
Q |
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| T |
84606 |
ctggttcgtattcacgatgagtacacgtcactcttggtgcatcccttgcgcttagaatttctctgcaccacactggtgagattgaaggtt |
84695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 12000040 - 12000161
Alignment:
| Q |
13 |
aatatgcagagatgatttcaaagttggtgtgttgttgtagtggatgaaccggaaggagagaacgaattgcagctacctcggtgggaccaaagaagaaagt |
112 |
Q |
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| T |
12000040 |
aatatgcggagatgatttcaaaataagaatgtggttgtagttggtgaggaggaaggagagtacgaattggcgccacctcggtgggaccaaagaagaaagt |
12000139 |
T |
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| Q |
113 |
gtgatgaaccatgtcgtctaag |
134 |
Q |
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| T |
12000140 |
gcggtgcatcatgtcatctaag |
12000161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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