View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0964_low_34 (Length: 339)
Name: NF0964_low_34
Description: NF0964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0964_low_34 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 11 - 339
Target Start/End: Original strand, 32914973 - 32915301
Alignment:
| Q |
11 |
cacagaacagcccttaagcactgcctatacaattgatcctatgtactccatcactgcataccgaagcctcaaaaccatccagctagaactgtgcatctgt |
110 |
Q |
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| T |
32914973 |
cacagaacagcccttaagcactgcctatacaattgatcctatgtacttcatcactgcataccgaagcctcaaaaccatccagctagaactgtgcatctgt |
32915072 |
T |
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| Q |
111 |
aatatgcgctcctaaaaactcacagccggtacacaagcccaaaagcaccgccagttacttcacgtgagaagaaaatctcgacagactcaccagtactgtc |
210 |
Q |
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| T |
32915073 |
aatatgcgctcctaaaaactcacagccggtacacaagcccaaaagcaccgccagttacttcacgtgagaagaaaatctcgacagactcaccagtactgtc |
32915172 |
T |
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| Q |
211 |
actacaccccaattagctacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgtttgtatattcagcctacacaaactcca |
310 |
Q |
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| T |
32915173 |
actacaccccaattagctacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgcttgtatattcagcctacacaaactcca |
32915272 |
T |
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| Q |
311 |
ccgccatgaattaaccacaatttccgcca |
339 |
Q |
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| T |
32915273 |
ccgccatgaattaaccacaatttccgcca |
32915301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 227 - 339
Target Start/End: Complemental strand, 2308361 - 2308249
Alignment:
| Q |
227 |
ctacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgtttgtatattcagcctacacaaactccaccgccatgaattaacc |
326 |
Q |
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| T |
2308361 |
ctacttcctcgttagacattcttgaggattccaattccattcataatatagacaggtttgcatattaagtctagacaaactccacctccatgaatttacc |
2308262 |
T |
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| Q |
327 |
acaatttccgcca |
339 |
Q |
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| T |
2308261 |
acaatctccgcca |
2308249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 228 - 336
Target Start/End: Original strand, 9359281 - 9359389
Alignment:
| Q |
228 |
tacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgtttgtatattcagcctacacaaactccaccgccatgaattaacca |
327 |
Q |
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| T |
9359281 |
tacttccttaatagacattcttgtggattccaattccattcataatataagcatgtttgcatatcaagcctatacaaactccaccgccacgaattaacaa |
9359380 |
T |
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| Q |
328 |
caatttccg |
336 |
Q |
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|||| |||| |
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| T |
9359381 |
caatctccg |
9359389 |
T |
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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 227 - 316
Target Start/End: Complemental strand, 43805617 - 43805528
Alignment:
| Q |
227 |
ctacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgtttgtatattcagcctacacaaactccaccgcca |
316 |
Q |
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|||||||||| | || || ||||||||||||||| | ||||||||| ||||||| ||||| ||||| |||||| |||||||||||||||| |
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| T |
43805617 |
ctacttcctcaaaaggcactcttgaggattccaacttcattcataatataaacaagtttgcatattaagcctatacaaactccaccgcca |
43805528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 271
Target Start/End: Original strand, 520028 - 520057
Alignment:
| Q |
242 |
acattcttgaggattccaattccattcata |
271 |
Q |
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| T |
520028 |
acattcttgaggattccaattccattcata |
520057 |
T |
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