View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0964_low_35 (Length: 337)

Name: NF0964_low_35
Description: NF0964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0964_low_35
NF0964_low_35
[»] chr4 (4 HSPs)
chr4 (90-336)||(41222547-41222813)
chr4 (6-94)||(3638017-3638105)
chr4 (6-85)||(3646893-3646972)
chr4 (165-244)||(41224249-41224327)
[»] chr8 (1 HSPs)
chr8 (172-243)||(29512511-29512582)
[»] chr2 (3 HSPs)
chr2 (174-252)||(1871754-1871833)
chr2 (272-324)||(1871779-1871831)
chr2 (182-242)||(18313650-18313710)
[»] chr3 (2 HSPs)
chr3 (198-252)||(30329313-30329367)
chr3 (175-227)||(30307566-30307618)
[»] scaffold0392 (2 HSPs)
scaffold0392 (197-252)||(9739-9794)
scaffold0392 (205-242)||(8481-8518)
[»] scaffold0040 (1 HSPs)
scaffold0040 (201-252)||(53869-53920)
[»] chr5 (2 HSPs)
chr5 (202-252)||(37421235-37421285)
chr5 (184-225)||(27780960-27781001)
[»] chr7 (1 HSPs)
chr7 (175-243)||(28907655-28907724)


Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 90 - 336
Target Start/End: Original strand, 41222547 - 41222813
Alignment:
Q  90 ctgctctcaatgtttaagcttgggtagcttctaccttatggaatggttaaacttatatttgagtt--------------------atggattctacttaa 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    |||||||||||||||    
T  41222547 ctgctctcaatgtttaagcttgggtagcttctaccttatggaatggttaaacttatatttgagttatggccttaactcataagttatggattctacttaa 41222646  T
Q  170 tggttaagttactatcaagttattttaaataatattcaagctcttattatttctcttatctttttatctaaaacccataacttaatatggnnnnnnnatc 269  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||    
T  41222647 tggttaagttactatcaagttagtttaaataatattcaagctcttattatttctcttatctttttatctaaaacccataacttaatatggtttttttatc 41222746  T
Q  270 tcagctactagcaagttattatcaataatattcaagcccttattatttctctcattatattattcga 336  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41222747 taagctactagcaagttattatcaataatattcaagcccttattatttctctcattattttattcga 41222813  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 6 - 94
Target Start/End: Complemental strand, 3638105 - 3638017
Alignment:
Q  6 acatatgcaggtataccttcccattctaaagttgcagtcatcaatgttccaaagctgaagcaagtaattggaattttatctgtgctgct 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  3638105 acatatgcaggtataccttcccattctaaagttgcagtcatcaatgttccaaagctgaagcaagtaattggaattttatcagtgatgct 3638017  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 3646972 - 3646893
Alignment:
Q  6 acatatgcaggtataccttcccattctaaagttgcagtcatcaatgttccaaagctgaagcaagtaattggaattttatc 85  Q
    |||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| |||||||||| || ||||||    
T  3646972 acatatgcaggtataccttcccattctaaagtagctgtcatcaaagttccaaagctgaaacaagtaattgaaactttatc 3646893  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 41224249 - 41224327
Alignment:
Q  165 cttaatggttaagttactatcaagttattttaaataatattcaagctcttattatttctcttatctttttatctaaaacc 244  Q
    ||||||||||||  | ||||||| ||||| | | ||||||||||| |||||||||||||||  ||||||||| |||||||    
T  41224249 cttaatggttaaacttctatcaaattattatca-taatattcaagttcttattatttctctcctctttttatttaaaacc 41224327  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 29512582 - 29512511
Alignment:
Q  172 gttaagttactatcaagttattttaaataatattcaagctcttattatttctcttatctttttatctaaaac 243  Q
    |||||||||||||||||||||| | ||| ||||| ||||||||||||||| ||||| | |||||||||||||    
T  29512582 gttaagttactatcaagttattgtcaattatatttaagctcttattatttatcttacccttttatctaaaac 29512511  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 252
Target Start/End: Complemental strand, 1871833 - 1871754
Alignment:
Q  174 taagttactatcaagttattttaaataatattcaagctcttattatttctcttatctttttat-ctaaaacccataactt 252  Q
    |||| ||||||||||||||| | |||||||||||||||| | |||||| ||| ||| |||||| ||||||||||| ||||    
T  1871833 taagctactatcaagttattatcaataatattcaagctcgttttatttttctcatccttttatactaaaacccatcactt 1871754  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 1871831 - 1871779
Alignment:
Q  272 agctactagcaagttattatcaataatattcaagcccttattatttctctcat 324  Q
    |||||||| |||||||||||||||||||||||||| | | |||||| ||||||    
T  1871831 agctactatcaagttattatcaataatattcaagctcgttttatttttctcat 1871779  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 18313710 - 18313650
Alignment:
Q  182 tatcaagttattttaaataatattcaagctcttattatttctcttatctttttatctaaaa 242  Q
    ||||||| |||| | |||||||||||| |||||||||||| ||| ||| ||||||| ||||    
T  18313710 tatcaagctattatcaataatattcaaactcttattatttttctcatcattttatccaaaa 18313650  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 30329367 - 30329313
Alignment:
Q  198 ataatattcaagctcttattatttctcttatctttttatctaaaacccataactt 252  Q
    ||||||||||| ||||||||||||||||  |  ||||||||||||||||||||||    
T  30329367 ataatattcaacctcttattatttctctcctacttttatctaaaacccataactt 30329313  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 30307618 - 30307566
Alignment:
Q  175 aagttactatcaagttattttaaataatattcaagctcttattatttctctta 227  Q
    |||||||||||||||||||     |||||||||| ||||||||||||||||||    
T  30307618 aagttactatcaagttattaccgctaatattcaacctcttattatttctctta 30307566  T

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Target: scaffold0392 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0392
Description:

Target: scaffold0392; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 9739 - 9794
Alignment:
Q  197 aataatattcaagctcttattatttctcttatctttttatctaaaacccataactt 252  Q
    |||||||||||||||||| ||| | ||||  ||||||||||||||||| |||||||    
T  9739 aataatattcaagctcttgttactactctcctctttttatctaaaacctataactt 9794  T

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Target: scaffold0392; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 8481 - 8518
Alignment:
Q  205 tcaagctcttattatttctcttatctttttatctaaaa 242  Q
    |||||||||||||||||||||  |||||||||||||||    
T  8481 tcaagctcttattatttctctcctctttttatctaaaa 8518  T

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Target: scaffold0040 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 53869 - 53920
Alignment:
Q  201 atattcaagctcttattatttctcttatctttttatctaaaacccataactt 252  Q
    ||||||||||||||||||||| ||| ||| ||| |||||||||||| |||||    
T  53869 atattcaagctcttattatttttctcatcctttaatctaaaacccacaactt 53920  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 37421285 - 37421235
Alignment:
Q  202 tattcaagctcttattatttctcttatctttttatctaaaacccataactt 252  Q
    |||||||||| |||||||||||||  | |||||||||||||| ||||||||    
T  37421285 tattcaagctattattatttctctattttttttatctaaaactcataactt 37421235  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 27780960 - 27781001
Alignment:
Q  184 tcaagttattttaaataatattcaagctcttattatttctct 225  Q
    ||||||||||||  |||||||||||||||||| |||||||||    
T  27780960 tcaagttattttcgataatattcaagctcttactatttctct 27781001  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 28907724 - 28907655
Alignment:
Q  175 aagttactatcaagttattttaaataatattc-aagctcttattatttctcttatctttttatctaaaac 243  Q
    |||||| |||||||||||| |  ||||||||| ||| ||||||||||| ||| ||| |||||||||||||    
T  28907724 aagttagtatcaagttattatcgataatattcgaagttcttattatttttctcatccttttatctaaaac 28907655  T

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