View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0964_low_43 (Length: 297)

Name: NF0964_low_43
Description: NF0964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0964_low_43
NF0964_low_43
[»] chr8 (3 HSPs)
chr8 (145-286)||(32915278-32915419)
chr8 (30-133)||(32916032-32916135)
chr8 (169-258)||(24945367-24945456)
[»] chr1 (1 HSPs)
chr1 (163-286)||(2308149-2308272)
[»] chr3 (1 HSPs)
chr3 (169-284)||(9359371-9359486)
[»] scaffold0001 (1 HSPs)
scaffold0001 (173-257)||(520131-520215)
[»] chr4 (1 HSPs)
chr4 (165-260)||(51091110-51091205)
[»] chr2 (1 HSPs)
chr2 (169-215)||(41195215-41195261)
[»] chr7 (1 HSPs)
chr7 (163-228)||(43805405-43805470)


Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 145 - 286
Target Start/End: Complemental strand, 32915419 - 32915278
Alignment:
Q  145 gaggaagtagataatttgaaaggtttgtggatcatttggcatgcaactatttgggctatttggcaagcgaggaatcatttgatttttcgtaatgaggtga 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32915419 gaggaagtagataatttgaaaggtttgtggatcatttggcatgcaactatttgggctatttggcaagcgaggaatcatttgatttttcgtaatgaggtga 32915320  T
Q  245 aacatgtggatgatcttttggcggaaattgtggttaattcat 286  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  32915319 aacatgtggatgatcttttggcggaaattgtggttaattcat 32915278  T

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Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 32916135 - 32916032
Alignment:
Q  30 caagcacctcaaaaacaataagctgccactaacaaccccataaacaaaatagttgcaattccacgataataccttaatttccaccaccatttcccccacc 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||| |||||||||||||||||    
T  32916135 caagcacctcaaaaacaataagctgccactaacaaccccataaacaaaatagttgcaattccaccataataacttaatatcctccaccatttcccccacc 32916036  T
Q  130 tctt 133  Q
    ||||    
T  32916035 tctt 32916032  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 24945367 - 24945456
Alignment:
Q  169 ttgtggatcatttggcatgcaactatttgggctatttggcaagcgaggaatcatttgatttttcgtaatgaggtgaaacatgtggatgat 258  Q
    |||||||| ||||||||||||||||||||| | ||||||||||| || |||||||  ||||| || |||||||||||| |||||||||||    
T  24945367 ttgtggattatttggcatgcaactatttggtcaatttggcaagctagaaatcattgtattttccggaatgaggtgaaatatgtggatgat 24945456  T

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Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 163 - 286
Target Start/End: Original strand, 2308149 - 2308272
Alignment:
Q  163 aaaggtttgtggatcatttggcatgcaactatttgggctatttggcaagcgaggaatcatttgatttttcgtaatgaggtgaaacatgtggatgatcttt 262  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||| | ||||||||| | ||||||||| ||| |||    
T  2308149 aaaggtttgtggatcatttggcatgcaactatatgggctatttggcaagcgaggaaccattcgattttccttaatgaggtaatacatgtggaagatattt 2308248  T
Q  263 tggcggaaattgtggttaattcat 286  Q
    ||||||| |||||||| |||||||    
T  2308249 tggcggagattgtggtaaattcat 2308272  T

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Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 9359486 - 9359371
Alignment:
Q  169 ttgtggatcatttggcatgcaactatttgggctatttggcaagcgaggaatcatttgatttttcgtaatgaggtgaaacatgtggatgatcttttggcgg 268  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||| || || ||||||||||| |||||||||||||||||| |||    
T  9359486 ttgtggattatttggcatgcaactatttgggctatttggcaagctaggaatcatatgatcttccgaaatgaggtgaagcatgtggatgatcttttgtcgg 9359387  T
Q  269 aaattgtggttaattc 284  Q
    | ||||| ||||||||    
T  9359386 agattgttgttaattc 9359371  T

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Target: scaffold0001 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 257
Target Start/End: Complemental strand, 520215 - 520131
Alignment:
Q  173 ggatcatttggcatgcaactatttgggctatttggcaagcgaggaatcatttgatttttcgtaatgaggtgaaacatgtggatga 257  Q
    |||| |||||| |||||||||||||| | |||||||||||||| |||||||| || || || ||||||||||||  |||||||||    
T  520215 ggattatttgggatgcaactatttggtcaatttggcaagcgagaaatcattttatattccggaatgaggtgaaatctgtggatga 520131  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 260
Target Start/End: Original strand, 51091110 - 51091205
Alignment:
Q  165 aggtttgtggatcatttggcatgcaactatttgggctatttggcaagcgaggaatcatttgatttttcgtaatgaggtgaaacatgtggatgatct 260  Q
    |||||| ||||| ||||||||||||||||||| ||   |||||||||  ||||||||  | |||||||| ||||| |||||| ||||||| |||||    
T  51091110 aggtttatggatgatttggcatgcaactattttggtcctttggcaagttaggaatcacattatttttcggaatgatgtgaaatatgtggaagatct 51091205  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 41195261 - 41195215
Alignment:
Q  169 ttgtggatcatttggcatgcaactatttgggctatttggcaagcgag 215  Q
    |||||||| ||||||||||| |||||||||| |||||||||||||||    
T  41195261 ttgtggattatttggcatgctactatttgggttatttggcaagcgag 41195215  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 228
Target Start/End: Original strand, 43805405 - 43805470
Alignment:
Q  163 aaaggtttgtggatcatttggcatgcaactatttgggctatttggcaagcgaggaatcatttgatt 228  Q
    |||||||| ||||| ||||||||||||||| ||| || ||| ||||||| ||| ||||||||||||    
T  43805405 aaaggtttatggattatttggcatgcaactctttagggtatctggcaagtgagaaatcatttgatt 43805470  T

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