View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0964_low_46 (Length: 290)
Name: NF0964_low_46
Description: NF0964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0964_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 18246288 - 18246349
Alignment:
| Q |
182 |
aaggaatgtaacttgagaaatttgtgacatgagatgaataaatgtatgtgttgtatattctt |
243 |
Q |
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| T |
18246288 |
aaggaatgtaacttgagaaatttgtgacatgagatgaataaatgtatgtgttgtattttctt |
18246349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 70 - 120
Target Start/End: Original strand, 18246176 - 18246226
Alignment:
| Q |
70 |
aaaactatgatgttactcatgaaagaatgaggaattaatcttgaggattag |
120 |
Q |
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| T |
18246176 |
aaaactatgatgttactcatgaaagaatgaggaattaatcttgaggattag |
18246226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 18256194 - 18256145
Alignment:
| Q |
194 |
ttgagaaatttgtgacatgagatgaataaatgtatgtgttgtatattctt |
243 |
Q |
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| T |
18256194 |
ttgagaaatttgtgacatgagatgaataaatgtatgtgttttattttctt |
18256145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 18253408 - 18253448
Alignment:
| Q |
197 |
agaaatttgtgacatgagatgaataaatgtatgtgttgtat |
237 |
Q |
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| T |
18253408 |
agaaatttgtgacatgagatgaataaacgtacatgttgtat |
18253448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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